Difference between revisions of "DIHYDROXYNAPHTHOATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETALD-DEHYDROG-RXN ACETALD-DEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec...")
(Created page with "Category:Gene == Gene Tiso_gene_13083 == * right end position: ** 3632 * transcription direction: ** POSITIVE * left end position: ** 2216 * centisome position: ** 33.8682...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETALD-DEHYDROG-RXN ACETALD-DEHYDROG-RXN] ==
+
== Gene Tiso_gene_13083 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 3632
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/1.2.1.10 EC-1.2.1.10]
+
** 2216
 +
* centisome position:
 +
** 33.868256   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[2.3.1.41-RXN]]
−
** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[ACETALD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[NADH]][c]
+
** Source: [[annotation-experimental_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 acetaldehyde[c] '''<=>''' 1 H+[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 NADH[c]
+
* Reaction: [[3-OXOACYL-ACP-REDUCT-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_7649]]
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*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Reaction: [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
−
* [[Tiso_gene_2052]]
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** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: automated-name-match
−
** [[pantograph]]-[[creinhardtii]]
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* Reaction: [[RXN-10060]]
−
== Pathways  ==
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-5436]], L-threonine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5436 PWY-5436]
+
*** Assignment: ec-number
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** Source: [[annotation-experimental_annotation]]
−
* [[PWY-7180]], 2'-deoxy-&alpha;-D-ribose 1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7180 PWY-7180]
+
*** Assignment: ec-number
−
** '''1''' reactions found over '''3''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
−
* [[PWY-5162]], 2-oxopentenoate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5162 PWY-5162]
+
* Reaction: [[RXN-10655]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-7085]], triethylamine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7085 PWY-7085]
+
*** Assignment: ec-number
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** Source: [[annotation-experimental_annotation]]
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
+
*** Assignment: ec-number
−
** '''9''' reactions found over '''16''' reactions in the full pathway
+
** Source: [[orthology-esiliculosus]]
−
* [[PHOSPHONOTASE-PWY]], 2-aminoethylphosphonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHONOTASE-PWY PHOSPHONOTASE-PWY]
+
* Reaction: [[RXN-10659]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** Source: [[annotation-in-silico_annotation]]
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
*** Assignment: ec-number
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
** Source: [[annotation-experimental_annotation]]
−
* [[P161-PWY]], acetylene degradation: [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY]
+
*** Assignment: ec-number
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** Source: [[orthology-esiliculosus]]
−
* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ETOH-ACETYLCOA-ANA-PWY ETOH-ACETYLCOA-ANA-PWY]
+
* Reaction: [[RXN-11476]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
+
*** Assignment: ec-number
−
** '''5''' reactions found over '''13''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
−
* [[PWY-5480]], pyruvate fermentation to ethanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5480 PWY-5480]
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*** Assignment: ec-number
−
** '''2''' reactions found over '''3''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
−
* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
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* Reaction: [[RXN-11480]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** Source: [[annotation-in-silico_annotation]]
−
== Reconstruction information  ==
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*** Assignment: ec-number
−
* Category: [[orthology]]
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** Source: [[annotation-experimental_annotation]]
−
** Source: [[orthology-creinhardtii]]
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*** Assignment: ec-number
−
*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
−
* Category: [[annotation]]
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* Reaction: [[RXN-12994]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-13008]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-13443]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-16616]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16626]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16630]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9514]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9518]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9524]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9528]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9532]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9536]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9540]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9544]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9552]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9556]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-9633]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN0-2142]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1050]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1053]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-1247]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-157]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-163]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-182]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-184]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-203]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-240]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-252]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-260]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-262]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-287]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-349]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-358]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-364]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-384]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-408]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-409]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-469]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-481]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-508]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-613]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-617]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-637]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-717]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-72]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-853]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-881]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN1G-951]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-7388]]
 +
* [[PWY-5367]]
 +
* [[PWY-5972]]
 +
* [[PWY-5973]]
 +
* [[PWY-5971]]
 +
* [[PWY-5499]]
 +
* [[PWY0-862]]
 +
* [[PWY-7053]]
 +
* [[PWY-6113]]
 +
* [[PWY-7619]]
 +
* [[PWY-6282]]
 +
* [[PWY-5994]]
 +
* [[PWY3O-355]]
 +
* [[PWY-7724]]
 +
* [[PWY-7727]]
 +
* [[FASYN-ELONG-PWY]]
 +
* [[PWY-6519]]
 +
* [[PWY-7602]]
 +
* [[PWY-7606]]
 +
* [[PWY-5989]]
 +
* [[PWYG-321]]
 +
* [[PWY-7663]]
 +
* [[PWY-7664]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=3632}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23288 23288]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=2216}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00228 R00228]
+
{{#set: centisome position=33.868256    }}
−
* UNIPROT:
+
{{#set: reaction associated=2.3.1.41-RXN|3-OXOACYL-ACP-REDUCT-RXN|PYRIDOXAL-4-DEHYDROGENASE-RXN|RXN-10060|RXN-10655|RXN-10659|RXN-11476|RXN-11480|RXN-12994|RXN-13008|RXN-13443|RXN-16616|RXN-16622|RXN-16626|RXN-16630|RXN-9514|RXN-9518|RXN-9524|RXN-9528|RXN-9532|RXN-9536|RXN-9540|RXN-9544|RXN-9552|RXN-9556|RXN-9633|RXN0-2142|RXN1G-1050|RXN1G-1053|RXN1G-1247|RXN1G-157|RXN1G-163|RXN1G-182|RXN1G-184|RXN1G-203|RXN1G-240|RXN1G-252|RXN1G-260|RXN1G-262|RXN1G-287|RXN1G-349|RXN1G-358|RXN1G-364|RXN1G-384|RXN1G-408|RXN1G-409|RXN1G-469|RXN1G-481|RXN1G-508|RXN1G-613|RXN1G-617|RXN1G-637|RXN1G-717|RXN1G-72|RXN1G-853|RXN1G-881|RXN1G-951}}
−
** [http://www.uniprot.org/uniprot/Q52434 Q52434]
+
{{#set: pathway associated=PWY-7388|PWY-5367|PWY-5972|PWY-5973|PWY-5971|PWY-5499|PWY0-862|PWY-7053|PWY-6113|PWY-7619|PWY-6282|PWY-5994|PWY3O-355|PWY-7724|PWY-7727|FASYN-ELONG-PWY|PWY-6519|PWY-7602|PWY-7606|PWY-5989|PWYG-321|PWY-7663|PWY-7664}}
−
** [http://www.uniprot.org/uniprot/P0A9Q7 P0A9Q7]
+
−
** [http://www.uniprot.org/uniprot/P77580 P77580]
+
−
** [http://www.uniprot.org/uniprot/P71866 P71866]
+
−
** [http://www.uniprot.org/uniprot/Q52060 Q52060]
+
−
** [http://www.uniprot.org/uniprot/Q52016 Q52016]
+
−
** [http://www.uniprot.org/uniprot/O85978 O85978]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.2.1.10}}
+
−
{{#set: gene associated=Tiso_gene_7649|Tiso_gene_2052}}
+
−
{{#set: in pathway=PWY-5436|PWY-7180|PWY-5162|PWY-7085|FERMENTATION-PWY|PHOSPHONOTASE-PWY|P122-PWY|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY4LZ-257|PWY-5480|PWY-6587}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:47, 21 March 2018

Gene Tiso_gene_13083

  • right end position:
    • 3632
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2216
  • centisome position:
    • 33.868256
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DIHYDROXYNAPHTHOATE&oldid=30185"