Difference between revisions of "PWY-5098"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** aminotransfera...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-122...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
 
* common name:
 
* common name:
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** aminotransferase
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** colanic acid building blocks biosynthesis
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** aspartate_aminotransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''11''' reactions in the full pathway
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** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[GLT]][c]
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* [[PWY-5659]]
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* With common name(s):
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** 0 associated gene:
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** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 oxaloacetate[c] '''+''' 1 L-glutamate[c]
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* [[PWY-66]]
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** 0 associated gene:
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== Genes associated with this reaction  ==
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* [[PWY-7343]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* [[Tiso_gene_6815]]
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* [[PWY-7344]]
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** IN-SILICO_ANNOTATION
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** 0 associated gene:
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***EC-NUMBER
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* [[UDPGLUCEPIM-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** 4 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_9823]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_15395]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[Tiso_gene_3236]]
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* [[Tiso_gene_13538]]
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*** [[Tiso_gene_10797]]
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** [[pantograph]]-[[esiliculosus]]
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** 5 reconstruction source(s) associated:
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* [[Tiso_gene_15680]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-athaliana]]
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* [[Tiso_gene_17718]]
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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== Reaction(s) not found ==
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7346 PWY-7346]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17809]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_12889]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21824 21824]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
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{{#set: common name=colanic acid building blocks biosynthesis}}
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* UNIPROT:
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
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{{#set: total reaction=11}}
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** [http://www.uniprot.org/uniprot/P08906 P08906]
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{{#set: completion rate=45.0}}
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** [http://www.uniprot.org/uniprot/P12343 P12343]
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** [http://www.uniprot.org/uniprot/Q06191 Q06191]
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** [http://www.uniprot.org/uniprot/Q02635 Q02635]
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** [http://www.uniprot.org/uniprot/Q60317 Q60317]
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** [http://www.uniprot.org/uniprot/O28151 O28151]
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** [http://www.uniprot.org/uniprot/O67781 O67781]
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** [http://www.uniprot.org/uniprot/P08907 P08907]
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** [http://www.uniprot.org/uniprot/P12345 P12345]
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** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
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** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
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** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
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** [http://www.uniprot.org/uniprot/P53001 P53001]
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** [http://www.uniprot.org/uniprot/P96847 P96847]
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** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
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** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
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** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
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** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
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** [http://www.uniprot.org/uniprot/O66737 O66737]
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** [http://www.uniprot.org/uniprot/O28650 O28650]
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** [http://www.uniprot.org/uniprot/O30304 O30304]
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** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
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** [http://www.uniprot.org/uniprot/O27916 O27916]
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** [http://www.uniprot.org/uniprot/O05237 O05237]
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** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
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** [http://www.uniprot.org/uniprot/O25383 O25383]
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** [http://www.uniprot.org/uniprot/O27638 O27638]
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** [http://www.uniprot.org/uniprot/O96142 O96142]
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** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
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** [http://www.uniprot.org/uniprot/P00507 P00507]
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** [http://www.uniprot.org/uniprot/P44425 P44425]
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** [http://www.uniprot.org/uniprot/Q59569 Q59569]
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** [http://www.uniprot.org/uniprot/Q59197 Q59197]
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** [http://www.uniprot.org/uniprot/P37833 P37833]
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** [http://www.uniprot.org/uniprot/O48599 O48599]
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** [http://www.uniprot.org/uniprot/O33822 O33822]
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** [http://www.uniprot.org/uniprot/P05201 P05201]
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** [http://www.uniprot.org/uniprot/P05202 P05202]
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** [http://www.uniprot.org/uniprot/P14909 P14909]
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** [http://www.uniprot.org/uniprot/P17174 P17174]
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** [http://www.uniprot.org/uniprot/P33097 P33097]
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** [http://www.uniprot.org/uniprot/Q43057 Q43057]
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** [http://www.uniprot.org/uniprot/Q43305 Q43305]
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** [http://www.uniprot.org/uniprot/Q42794 Q42794]
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** [http://www.uniprot.org/uniprot/P12344 P12344]
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** [http://www.uniprot.org/uniprot/Q01802 Q01802]
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** [http://www.uniprot.org/uniprot/Q40325 Q40325]
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** [http://www.uniprot.org/uniprot/P36692 P36692]
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** [http://www.uniprot.org/uniprot/P28011 P28011]
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** [http://www.uniprot.org/uniprot/Q42391 Q42391]
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** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
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** [http://www.uniprot.org/uniprot/Q53951 Q53951]
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** [http://www.uniprot.org/uniprot/Q42803 Q42803]
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** [http://www.uniprot.org/uniprot/Q42425 Q42425]
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** [http://www.uniprot.org/uniprot/Q55128 Q55128]
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** [http://www.uniprot.org/uniprot/P72859 P72859]
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** [http://www.uniprot.org/uniprot/Q55453 Q55453]
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** [http://www.uniprot.org/uniprot/Q55679 Q55679]
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** [http://www.uniprot.org/uniprot/O48598 O48598]
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** [http://www.uniprot.org/uniprot/Q42991 Q42991]
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** [http://www.uniprot.org/uniprot/P46248 P46248]
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** [http://www.uniprot.org/uniprot/O48548 O48548]
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** [http://www.uniprot.org/uniprot/Q60013 Q60013]
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** [http://www.uniprot.org/uniprot/P28734 P28734]
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** [http://www.uniprot.org/uniprot/Q17994 Q17994]
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** [http://www.uniprot.org/uniprot/Q17983 Q17983]
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** [http://www.uniprot.org/uniprot/Q22066 Q22066]
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** [http://www.uniprot.org/uniprot/Q22067 Q22067]
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** [http://www.uniprot.org/uniprot/O01804 O01804]
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** [http://www.uniprot.org/uniprot/O54170 O54170]
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** [http://www.uniprot.org/uniprot/O42652 O42652]
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** [http://www.uniprot.org/uniprot/O94320 O94320]
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** [http://www.uniprot.org/uniprot/P46644 P46644]
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** [http://www.uniprot.org/uniprot/P00504 P00504]
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** [http://www.uniprot.org/uniprot/P00508 P00508]
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** [http://www.uniprot.org/uniprot/P00509 P00509]
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** [http://www.uniprot.org/uniprot/P00505 P00505]
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** [http://www.uniprot.org/uniprot/P00503 P00503]
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** [http://www.uniprot.org/uniprot/P00506 P00506]
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** [http://www.uniprot.org/uniprot/P26563 P26563]
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−
{{#set: direction=REVERSIBLE}}
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{{#set: common name=aminotransferase}}
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{{#set: common name=aspartate_aminotransferase}}
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{{#set: ec number=EC-2.6.1.1}}
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−
{{#set: gene associated=Tiso_gene_6815|Tiso_gene_13538|Tiso_gene_15680|Tiso_gene_17718|Tiso_gene_17809|Tiso_gene_12889}}
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−
{{#set: in pathway=PWY-5913|PWY-7383|ASPARTATE-DEG1-PWY|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
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−
{{#set: reconstruction category=orthology|manual|annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 14:48, 21 March 2018

Pathway COLANSYN-PWY

  • taxonomic range:
  • common name:
    • colanic acid building blocks biosynthesis
  • Synonym(s):

Reaction(s) found

5 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5098&oldid=30332"