Difference between revisions of "SHIKIMATE-5P"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-phosphatidylinosito...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
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** 1-phosphatidylinositol-4-phosphate_5-kinase
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** traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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** ORF
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** phosphatidylinositol-4-phosphate_5-kinase
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** phosphatidylinositol4phosphate5kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.68 EC-2.7.1.68]
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* Synonym(s):
 
* Synonym(s):
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** 13-lipoxygenase and 13-hydroperoxide lyase pathway
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** 13-LOX and 13-HPL pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD-1108]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN-1321]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a 1-phosphatidyl-1D-myo-inositol 4-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_4463]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_2021]]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYDROHEX-RXN HYDROHEX-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=LIPOXYGENASE-RXN LIPOXYGENASE-RXN]
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* [[Tiso_gene_17532]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11852 RXN-11852]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12299 RXN-12299]
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* [[Tiso_gene_1131]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1345 RXN-1345]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1346 RXN-1346]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1347 RXN-1347]
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* [[Tiso_gene_15721]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1349 RXN-1349]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_14966]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_2350]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_11381]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15722]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_14055]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17887]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_9590]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_2008]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_730]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9249]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_18887]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_7487]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6352]], 3-phosphoinositide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6352 PWY-6352]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6351 PWY-6351]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14425 14425]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5410 PWY-5410]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03469 R03469]
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{{#set: common name=traumatin and (Z)-3-hexen-1-yl acetate biosynthesis}}
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* UNIPROT:
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{{#set: common name=13-lipoxygenase and 13-hydroperoxide lyase pathway|13-LOX and 13-HPL pathway}}
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** [http://www.uniprot.org/uniprot/P48426 P48426]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q56YP2 Q56YP2]
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{{#set: total reaction=9}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=11.0}}
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{{#set: common name=1-phosphatidylinositol-4-phosphate_5-kinase}}
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{{#set: common name=ORF}}
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{{#set: common name=phosphatidylinositol-4-phosphate_5-kinase}}
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{{#set: common name=phosphatidylinositol4phosphate5kinase}}
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{{#set: ec number=EC-2.7.1.68}}
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{{#set: gene associated=Tiso_gene_2021|Tiso_gene_17532|Tiso_gene_1131|Tiso_gene_15721|Tiso_gene_14966|Tiso_gene_2350|Tiso_gene_11381|Tiso_gene_15722|Tiso_gene_14055|Tiso_gene_17887|Tiso_gene_9590|Tiso_gene_2008|Tiso_gene_730|Tiso_gene_9249|Tiso_gene_18887|Tiso_gene_7487}}
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{{#set: in pathway=PWY-6352|PWY-6351}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:49, 21 March 2018

Pathway PWY-5410

  • taxonomic range:
  • common name:
    • traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
  • Synonym(s):
    • 13-lipoxygenase and 13-hydroperoxide lyase pathway
    • 13-LOX and 13-HPL pathway

Reaction(s) found

1 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SHIKIMATE-5P&oldid=30473"