Difference between revisions of "Tiso gene 3358"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoyl_synthase_mitochondrial...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
−
** lipoyl_synthase_mitochondrial
+
** coumarin biosynthesis (via 2-coumarate)
−
** lipoyl_mitochondrial
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.8.1.8 EC-2.8.1.8]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''2''' reactions found over '''5''' reactions in the full pathway
−
** 2 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Octanoylated-domains]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[CH33ADO]][c]
+
* [[RXN-8036]]
−
* With common name(s):
+
** 15 associated gene(s):
−
** 2 a sulfurated [sulfur carrier][c] '''+''' 2 S-adenosyl-L-methionine[c] '''+''' 1 a [lipoyl-carrier protein] N6-octanoyl-L-lysine[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 a [lipoyl-carrier protein]-N6-lipoyl-L-lysine[c] '''+''' 2 an unsulfurated [sulfur carrier][c] '''+''' 2 5'-deoxyadenosine[c]
+
*** [[Tiso_gene_507]]
−
 
+
*** [[Tiso_gene_6187]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5836]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_3467]]
−
* [[Tiso_gene_8049]]
+
*** [[Tiso_gene_8669]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_6007]]
−
***EC-NUMBER
+
*** [[Tiso_gene_6188]]
−
* [[Tiso_gene_437]]
+
*** [[Tiso_gene_15066]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_13306]]
−
***EC-NUMBER
+
*** [[Tiso_gene_10001]]
−
== Pathways  ==
+
*** [[Tiso_gene_15067]]
−
* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987]
+
*** [[Tiso_gene_2843]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
*** [[Tiso_gene_2344]]
−
* [[PWY0-1275]], lipoate biosynthesis and incorporation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1275 PWY0-1275]
+
*** [[Tiso_gene_13305]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
*** [[Tiso_gene_6497]]
−
* [[PWY0-501]], lipoate biosynthesis and incorporation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-501 PWY0-501]
+
** 4 reconstruction source(s) associated:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
*** [[annotation-in-silico_annotation]]
−
== Reconstruction information  ==
+
*** [[orthology-athaliana]]
−
* Category: [[annotation]]
+
*** [[annotation-experimental_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
* [[RXN-8037]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.114-RXN 2.4.1.114-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8035 RXN-8035]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-2-MONOOXYGENASE-RXN TRANS-CINNAMATE-2-MONOOXYGENASE-RXN]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-3398}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07767 R07767]
+
{{#set: common name=coumarin biosynthesis (via 2-coumarate)}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction found=2}}
−
{{#set: common name=lipoyl_synthase_mitochondrial}}
+
{{#set: total reaction=5}}
−
{{#set: common name=lipoyl_mitochondrial}}
+
{{#set: completion rate=40.0}}
−
{{#set: ec number=EC-2.8.1.8}}
+
−
{{#set: gene associated=Tiso_gene_8049|Tiso_gene_437}}
+
−
{{#set: in pathway=PWY-6987|PWY0-1275|PWY0-501}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 14:49, 21 March 2018

Pathway PWY-5176

  • taxonomic range:
  • common name:
    • coumarin biosynthesis (via 2-coumarate)
  • Synonym(s):

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3358&oldid=30508"