Difference between revisions of "Tiso gene 3358"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoyl_synthase_mitochondrial...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-949 RXN0-949] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
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** lipoyl_synthase_mitochondrial
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** coumarin biosynthesis (via 2-coumarate)
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** lipoyl_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/2.8.1.8 EC-2.8.1.8]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''5''' reactions in the full pathway
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** 2 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Octanoylated-domains]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Lipoyl-Protein-N6-lipoyllysine]][c] '''+''' 2 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[CH33ADO]][c]
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* [[RXN-8036]]
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* With common name(s):
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** 15 associated gene(s):
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** 2 a sulfurated [sulfur carrier][c] '''+''' 2 S-adenosyl-L-methionine[c] '''+''' 1 a [lipoyl-carrier protein] N6-octanoyl-L-lysine[c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 2 L-methionine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 a [lipoyl-carrier protein]-N6-lipoyl-L-lysine[c] '''+''' 2 an unsulfurated [sulfur carrier][c] '''+''' 2 5'-deoxyadenosine[c]
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*** [[Tiso_gene_507]]
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*** [[Tiso_gene_6187]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5836]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_3467]]
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* [[Tiso_gene_8049]]
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*** [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_6007]]
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***EC-NUMBER
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*** [[Tiso_gene_6188]]
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* [[Tiso_gene_437]]
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*** [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13306]]
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***EC-NUMBER
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*** [[Tiso_gene_10001]]
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== Pathways  ==
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*** [[Tiso_gene_15067]]
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* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987]
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*** [[Tiso_gene_2843]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_2344]]
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* [[PWY0-1275]], lipoate biosynthesis and incorporation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1275 PWY0-1275]
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*** [[Tiso_gene_13305]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[Tiso_gene_6497]]
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* [[PWY0-501]], lipoate biosynthesis and incorporation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-501 PWY0-501]
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** 4 reconstruction source(s) associated:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[annotation]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[RXN-8037]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.114-RXN 2.4.1.114-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8035 RXN-8035]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-2-MONOOXYGENASE-RXN TRANS-CINNAMATE-2-MONOOXYGENASE-RXN]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3398}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07767 R07767]
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{{#set: common name=coumarin biosynthesis (via 2-coumarate)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=lipoyl_synthase_mitochondrial}}
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{{#set: total reaction=5}}
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{{#set: common name=lipoyl_mitochondrial}}
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{{#set: completion rate=40.0}}
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{{#set: ec number=EC-2.8.1.8}}
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{{#set: gene associated=Tiso_gene_8049|Tiso_gene_437}}
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{{#set: in pathway=PWY-6987|PWY0-1275|PWY0-501}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:49, 21 March 2018

Pathway PWY-5176

  • taxonomic range:
  • common name:
    • coumarin biosynthesis (via 2-coumarate)
  • Synonym(s):

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3358&oldid=30508"