Difference between revisions of "DIHYDRONEOPTERIN-P3"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] == * direction: ** LEFT-TO-RIGHT * common name: ** proline_dehydrogenase * ec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.3.4.1-RXN 5.3.4.1-RXN] == * direction: ** REVERSIBLE * common name: ** nucleoredoxin ** ORF ** pr...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.3.4.1-RXN 5.3.4.1-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** proline_dehydrogenase
+
** nucleoredoxin
 +
** ORF
 +
** probable_protein_disulfide-isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.5.5.2 EC-1.5.5.2]
+
** [http://enzyme.expasy.org/EC/5.3.4.1 EC-5.3.4.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ETR-Quinones]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETR-Quinols]][c]
+
** 1 [[Proteins-with-incorrect-disulfides]][c] '''<=>''' 1 [[Proteins-with-correct-disulfides]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an electron-transfer quinone[c] '''+''' 1 L-proline[c] '''=>''' 1 (S)-1-pyrroline-5-carboxylate[c] '''+''' 1 H+[c] '''+''' 1 an electron-transfer quinol[c]
+
** 1 a protein with incorrect disulfide bonds[c] '''<=>''' 1 a protein with correct disulfide bonds[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18826]]
+
* Gene: [[Tiso_gene_7350]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_9762]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_4244]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_18825]]
+
* Gene: [[Tiso_gene_15704]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4246]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_475]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14313]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5737]], (5R)-carbapenem carboxylate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5737 PWY-5737]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01253 R01253]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P95629 P95629]
+
** [http://www.uniprot.org/uniprot/P13667 P13667]
−
** [http://www.uniprot.org/uniprot/Q59206 Q59206]
+
** [http://www.uniprot.org/uniprot/P11598 P11598]
−
** [http://www.uniprot.org/uniprot/P74275 P74275]
+
** [http://www.uniprot.org/uniprot/P21195 P21195]
−
** [http://www.uniprot.org/uniprot/P10503 P10503]
+
** [http://www.uniprot.org/uniprot/P0AEG4 P0AEG4]
−
** [http://www.uniprot.org/uniprot/Q51873 Q51873]
+
** [http://www.uniprot.org/uniprot/P29828 P29828]
−
** [http://www.uniprot.org/uniprot/Q59426 Q59426]
+
** [http://www.uniprot.org/uniprot/P32557 P32557]
−
** [http://www.uniprot.org/uniprot/O24897 O24897]
+
** [http://www.uniprot.org/uniprot/Q27780 Q27780]
−
** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
+
** [http://www.uniprot.org/uniprot/P31810 P31810]
−
** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
+
** [http://www.uniprot.org/uniprot/Q9PDE2 Q9PDE2]
−
** [http://www.uniprot.org/uniprot/P09546 P09546]
+
** [http://www.uniprot.org/uniprot/O27777 O27777]
−
** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
+
** [http://www.uniprot.org/uniprot/Q9JSN7 Q9JSN7]
−
** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
+
** [http://www.uniprot.org/uniprot/P45111 P45111]
−
** [http://www.uniprot.org/uniprot/Q04499 Q04499]
+
** [http://www.uniprot.org/uniprot/P0AEG6 P0AEG6]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/O68904 O68904]
−
{{#set: common name=proline_dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/Q9PCE7 Q9PCE7]
−
{{#set: ec number=EC-1.5.5.2}}
+
** [http://www.uniprot.org/uniprot/Q9PDF5 Q9PDF5]
−
{{#set: gene associated=Tiso_gene_18826|Tiso_gene_9762|Tiso_gene_18825}}
+
** [http://www.uniprot.org/uniprot/Q9JSY5 Q9JSY5]
−
{{#set: in pathway=PROUT-PWY|PWY-6922|PWY-5737|CITRULBIO-PWY}}
+
** [http://www.uniprot.org/uniprot/Q9KPF0 Q9KPF0]
 +
** [http://www.uniprot.org/uniprot/P95460 P95460]
 +
** [http://www.uniprot.org/uniprot/P05307 P05307]
 +
** [http://www.uniprot.org/uniprot/P17967 P17967]
 +
** [http://www.uniprot.org/uniprot/P09102 P09102]
 +
** [http://www.uniprot.org/uniprot/P07237 P07237]
 +
** [http://www.uniprot.org/uniprot/P08003 P08003]
 +
** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
 +
** [http://www.uniprot.org/uniprot/P04785 P04785]
 +
** [http://www.uniprot.org/uniprot/P55059 P55059]
 +
** [http://www.uniprot.org/uniprot/Q27553 Q27553]
 +
** [http://www.uniprot.org/uniprot/P30101 P30101]
 +
** [http://www.uniprot.org/uniprot/Q7M1Q4 Q7M1Q4]
 +
** [http://www.uniprot.org/uniprot/Q04815 Q04815]
 +
** [http://www.uniprot.org/uniprot/P39691 P39691]
 +
** [http://www.uniprot.org/uniprot/P34329 P34329]
 +
** [http://www.uniprot.org/uniprot/Q12730 Q12730]
 +
** [http://www.uniprot.org/uniprot/Q43116 Q43116]
 +
** [http://www.uniprot.org/uniprot/Q9TWZ1 Q9TWZ1]
 +
** [http://www.uniprot.org/uniprot/P52588 P52588]
 +
** [http://www.uniprot.org/uniprot/Q17967 Q17967]
 +
** [http://www.uniprot.org/uniprot/P52234 P52234]
 +
** [http://www.uniprot.org/uniprot/O22263 O22263]
 +
** [http://www.uniprot.org/uniprot/P93358 P93358]
 +
** [http://www.uniprot.org/uniprot/P80284 P80284]
 +
** [http://www.uniprot.org/uniprot/P52589 P52589]
 +
** [http://www.uniprot.org/uniprot/O48949 O48949]
 +
** [http://www.uniprot.org/uniprot/P38661 P38661]
 +
** [http://www.uniprot.org/uniprot/O13704 O13704]
 +
** [http://www.uniprot.org/uniprot/O13811 O13811]
 +
** [http://www.uniprot.org/uniprot/Q10057 Q10057]
 +
** [http://www.uniprot.org/uniprot/Q92249 Q92249]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=nucleoredoxin}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=probable_protein_disulfide-isomerase}}
 +
{{#set: ec number=EC-5.3.4.1}}
 +
{{#set: gene associated=Tiso_gene_7350|Tiso_gene_4244|Tiso_gene_15704|Tiso_gene_4246|Tiso_gene_475|Tiso_gene_14313}}
 +
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:49, 21 March 2018

Reaction 5.3.4.1-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • nucleoredoxin
    • ORF
    • probable_protein_disulfide-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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