Difference between revisions of "RXN-12093"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3661 RXN-3661] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3661 RXN-3661] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.14.12.23 EC-1.14.12.23]
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** purine nucleobases degradation II (anaerobic)
 
* Synonym(s):
 
* Synonym(s):
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** purine fermentation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''24''' reactions in the full pathway
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** 1 [[BENZENE-NO2]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CATECHOL]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[NITRITE]][c]
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* [[GLYOHMETRANS-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 nitrobenzene[c] '''+''' 1 NADH[c] '''+''' 1 oxygen[c] '''=>''' 1 catechol[c] '''+''' 1 NAD+[c] '''+''' 1 nitrite[c]
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*** [[Tiso_gene_16153]]
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*** [[Tiso_gene_7776]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18652]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_16154]]
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* [[Tiso_gene_8263]]
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** 4 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_1547]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_3577]]
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* [[GUANINE-DEAMINASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_12280]]
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* [[PWY-5640]], nitrobenzene degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5640 PWY-5640]
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** 2 reconstruction source(s) associated:
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* Category: [[orthology]]
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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** Source: [[orthology-athaliana]]
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** 0 associated gene:
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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*** Tool: [[pantograph]]
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6004]]
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*** [[Tiso_gene_432]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-15124]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-15127]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN0-901]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11775]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.2-RXN 1.2.1.2-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8751 RXN-8751]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8753 RXN-8753]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8754 RXN-8754]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1239}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07706 R07706]
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{{#set: common name=purine nucleobases degradation II (anaerobic)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=purine fermentation}}
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{{#set: ec number=EC-1.14.12.23}}
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{{#set: reaction found=7}}
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{{#set: gene associated=Tiso_gene_8263|Tiso_gene_1547|Tiso_gene_3577}}
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{{#set: total reaction=24}}
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{{#set: in pathway=PWY-5640}}
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{{#set: completion rate=29.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 14:50, 21 March 2018

Pathway PWY-5497

  • taxonomic range:
  • common name:
    • purine nucleobases degradation II (anaerobic)
  • Synonym(s):
    • purine fermentation

Reaction(s) found

7 reactions found over 24 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12093&oldid=30627"