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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5338 PWY-5338] == |
| − | * direction: | + | * taxonomic range: |
| − | ** LEFT-TO-RIGHT
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803] |
| − | * ec number:
| + | * common name: |
| − | ** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9] | + | ** galactosylcyclitol biosynthesis |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''1''' reactions found over '''4''' reactions in the full pathway |
| − | ** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
| + | * [[RXN-8281]] |
| − | * With common name(s): | + | ** 2 associated gene(s): |
| − | ** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 5-amino-6-(D-ribitylamino)uracil[c] '''+''' 1 riboflavin[c] | + | *** [[Tiso_gene_6124]] |
| − | | + | *** [[Tiso_gene_18559]] |
| − | == Genes associated with this reaction ==
| + | ** 1 reconstruction source(s) associated: |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[annotation-in-silico_annotation]] |
| − | * [[Tiso_gene_13686]] | + | == Reaction(s) not found == |
| − | ** [[pantograph]]-[[athaliana]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8277 RXN-8277] |
| − | ** [[pantograph]]-[[synechocystis]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8278 RXN-8278] |
| − | ** [[pantograph]]-[[esiliculosus]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8279 RXN-8279] |
| − | ** [[pantograph]]-[[creinhardtii]] | + | |
| − | == Pathways == | + | |
| − | * [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167] | + | |
| − | ** '''4''' reactions found over '''10''' reactions in the full pathway | + | |
| − | * [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
| + | |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: taxonomic range=TAX-3803}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
| + | {{#set: common name=galactosylcyclitol biosynthesis}} |
| − | * LIGAND-RXN:
| + | {{#set: reaction found=1}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
| + | {{#set: total reaction=4}} |
| − | * UNIPROT:
| + | {{#set: completion rate=25.0}} |
| − | ** [http://www.uniprot.org/uniprot/P11998 P11998]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P16440 P16440]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24854 O24854]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O26237 O26237]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P66037 P66037]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P45273 P45273]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O66529 O66529]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q58584 Q58584]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O28856 O28856]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q01994 Q01994]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P61714 P61714]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P38145 P38145]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q55532 Q55532]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P73527 P73527]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44680 Q44680]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q44681 Q44681]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P50854 P50854]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P50856 P50856]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: ec number=EC-2.5.1.9}} | + | |
| − | {{#set: gene associated=Tiso_gene_13686}} | + | |
| − | {{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}} | + | |
| − | {{#set: reconstruction category=orthology}} | + | |
| − | {{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
