Difference between revisions of "Tiso gene 7682"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate_kinase * ec n...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** mevalonate pathway II (archaea)
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** thymidylate_kinase
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* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
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** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
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** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
 
* Synonym(s):
 
* Synonym(s):
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** isoprenoid pathway
 
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** MVA pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[1.1.1.34-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_17889]]
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** 1 ATP[c] '''+''' 1 dTMP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
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*** [[Tiso_gene_16182]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* Gene: [[Tiso_gene_3755]]
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** 3 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_16181]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_15327]]
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== Pathways  ==
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*** [[Tiso_gene_17451]]
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** 4 reconstruction source(s) associated:
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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*** [[orthology-creinhardtii]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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*** [[orthology-esiliculosus]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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** 3 associated gene(s):
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** '''4''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_14303]]
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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*** [[Tiso_gene_9236]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_8563]]
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** 3 reconstruction source(s) associated:
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** '''12''' reactions found over '''17''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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*** [[annotation-in-silico_annotation]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[IPPISOM-RXN]]
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* Category: [[manual]]
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** 1 associated gene(s):
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** Source: [[manual-primary_network]]
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*** [[Tiso_gene_8653]]
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* Category: [[annotation]]
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[MEVALONATE-KINASE-RXN]]
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*** Tool: [[pathwaytools]]
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** 1 associated gene(s):
+
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*** [[Tiso_gene_3811]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
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−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
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−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10067 RXN-10067]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10068 RXN-10068]
+
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2157}}
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* RHEA:
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{{#set: common name=mevalonate pathway II (archaea)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
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{{#set: common name=isoprenoid pathway|MVA pathway}}
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* LIGAND-RXN:
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{{#set: reaction found=5}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
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{{#set: total reaction=7}}
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* UNIPROT:
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{{#set: completion rate=71.0}}
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** [http://www.uniprot.org/uniprot/Q57741 Q57741]
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** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
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** [http://www.uniprot.org/uniprot/P0A720 P0A720]
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** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
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** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
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** [http://www.uniprot.org/uniprot/P33803 P33803]
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** [http://www.uniprot.org/uniprot/P42490 P42490]
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** [http://www.uniprot.org/uniprot/P00572 P00572]
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** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
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** [http://www.uniprot.org/uniprot/P68693 P68693]
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** [http://www.uniprot.org/uniprot/P23919 P23919]
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** [http://www.uniprot.org/uniprot/P36590 P36590]
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** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
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** [http://www.uniprot.org/uniprot/O81650 O81650]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=thymidylate_kinase}}
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{{#set: ec number=EC-2.7.4.12}}
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{{#set: ec number=EC-2.7.4.13}}
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{{#set: ec number=EC-2.7.4.9}}
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{{#set: gene associated=Tiso_gene_3755}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:51, 21 March 2018

Reaction DTMPKI-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 dTMP[c] => 1 ADP[c] + 1 dTDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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