Difference between revisions of "Tiso gene 3435"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6455 PWY-6455] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6455 PWY-6455] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
−
* ec number:
+
* common name:
−
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
+
** vancomycin resistance II
 
* Synonym(s):
 
* Synonym(s):
 +
** D-ala-D-serine biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
  '''1''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[P-COUMAROYL-COA]][c]
+
* [[5.1.1.18-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 4-coumarate[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 4-coumaroyl-CoA[c]
+
*** [[Tiso_gene_17207]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-creinhardtii]]
−
Genes have been associated with this reaction based on different elements listed below.
+
== Reaction(s) not found ==
−
* [[Tiso_gene_12275]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=3.4.13.22-RXN 3.4.13.22-RXN]
−
** [[pantograph]]-[[athaliana]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11299 RXN-11299]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14183]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046]
+
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
+
−
** '''7''' reactions found over '''15''' reactions in the full pathway
+
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320]
+
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
+
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
+
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19641 19641]
+
{{#set: common name=vancomycin resistance II}}
−
* LIGAND-RXN:
+
{{#set: common name=D-ala-D-serine biosynthesis}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
+
{{#set: reaction found=1}}
−
* UNIPROT:
+
{{#set: total reaction=3}}
−
** [http://www.uniprot.org/uniprot/P31684 P31684]
+
{{#set: completion rate=33.0}}
−
** [http://www.uniprot.org/uniprot/P31685 P31685]
+
−
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
+
−
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
+
−
** [http://www.uniprot.org/uniprot/P17814 P17814]
+
−
** [http://www.uniprot.org/uniprot/P31687 P31687]
+
−
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
+
−
** [http://www.uniprot.org/uniprot/P14912 P14912]
+
−
** [http://www.uniprot.org/uniprot/P14913 P14913]
+
−
** [http://www.uniprot.org/uniprot/P31686 P31686]
+
−
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
+
−
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
+
−
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
+
−
** [http://www.uniprot.org/uniprot/P93360 P93360]
+
−
** [http://www.uniprot.org/uniprot/P93361 P93361]
+
−
** [http://www.uniprot.org/uniprot/O24146 O24146]
+
−
** [http://www.uniprot.org/uniprot/O48868 O48868]
+
−
** [http://www.uniprot.org/uniprot/O48869 O48869]
+
−
** [http://www.uniprot.org/uniprot/O81139 O81139]
+
−
** [http://www.uniprot.org/uniprot/O81140 O81140]
+
−
** [http://www.uniprot.org/uniprot/P41636 P41636]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: ec number=EC-6.2.1.12}}
+
−
{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
+
−
{{#set: in pathway=PWY-6920|PWY-6435|PWY1F-FLAVSYN|PWY-7046|PWY-361|PWY-7397|PWY-6320|PWY-7398|PWY-5754|PWY-5135|PWY-6982}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Revision as of 14:52, 21 March 2018

Pathway PWY-6455

  • taxonomic range:
  • common name:
    • vancomycin resistance II
  • Synonym(s):
    • D-ala-D-serine biosynthesis

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3435&oldid=30847"