Difference between revisions of "URIDINE"

Revision as of 14:53, 21 March 2018

Pathway P341-PWY

taxonomic range:
- TAX-2157
common name:
- glycolysis V (Pyrococcus)
Synonym(s):
- archaeal Embden-Meyerhof pathway
- archaeal Embden-Meyerhof-Parnas pathway
- archaeal EMP pathway

Reaction(s) found

6 reactions found over 9 reactions in the full pathway

2PGADEHYDRAT-RXN
- 4 associated gene(s):
- 7 reconstruction source(s) associated:
3PGAREARR-RXN
- 16 associated gene(s):
- 7 reconstruction source(s) associated:
F16ALDOLASE-RXN
- 6 associated gene(s):
- 5 reconstruction source(s) associated:
PEPDEPHOS-RXN
- 4 associated gene(s):
- 7 reconstruction source(s) associated:
PGLUCISOM-RXN
- 1 associated gene(s):
  - Tiso_gene_19480
- 3 reconstruction source(s) associated:
TRIOSEPISOMERIZATION-RXN
- 4 associated gene(s):
- 7 reconstruction source(s) associated:

Reaction(s) not found

External links

@@ Line 1: / Line 1: @@
-[[Category:Gene]]
+[[Category:Pathway]]
-== Gene Tiso_gene_5424 ==
+== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] ==
-* left end position:
+* taxonomic range:
-** 7226
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
-* transcription direction:
+* common name:
-** NEGATIVE
+** glycolysis V (Pyrococcus)
-* right end position:
-** 9247
-* centisome position:
-** 53.57752
 * Synonym(s):
+** archaeal Embden-Meyerhof pathway
+** archaeal Embden-Meyerhof-Parnas pathway
+** archaeal EMP pathway
-== Reactions associated ==
+== Reaction(s) found ==
-* [[1.2.1.31-RXN]]
+ '''6''' reactions found over '''9''' reactions in the full pathway
-** in-silico_annotation
+* [[2PGADEHYDRAT-RXN]]
-***ec-number
+** 4 associated gene(s):
-* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
+*** [[Tiso_gene_8720]]
-** in-silico_annotation
+*** [[Tiso_gene_14718]]
-***ec-number
+*** [[Tiso_gene_5619]]
-* [[ALCOHOL-DEHYDROG-RXN]]
+*** [[Tiso_gene_13317]]
-** in-silico_annotation
+** 7 reconstruction source(s) associated:
-***ec-number
+*** [[annotation-experimental_annotation]]
-* [[ALLYSINE-DEHYDROG-RXN]]
+*** [[orthology-esiliculosus]]
-** in-silico_annotation
+*** [[annotation-in-silico_annotation]]
-***ec-number
+*** [[orthology-athaliana]]
-* [[L-IDITOL-2-DEHYDROGENASE-RXN]]
+*** [[orthology-synechocystis]]
-** in-silico_annotation
+*** [[manual-primary_network]]
-***ec-number
+*** [[orthology-creinhardtii]]
-* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
+* [[3PGAREARR-RXN]]
-** in-silico_annotation
+** 16 associated gene(s):
-***ec-number
+*** [[Tiso_gene_15048]]
-* [[RXN-10781]]
+*** [[Tiso_gene_7201]]
-** in-silico_annotation
+*** [[Tiso_gene_9922]]
-***ec-number
+*** [[Tiso_gene_2841]]
-* [[RXN-10855]]
+*** [[Tiso_gene_14530]]
-** in-silico_annotation
+*** [[Tiso_gene_16754]]
-***ec-number
+*** [[Tiso_gene_2365]]
-* [[RXN-10911]]
+*** [[Tiso_gene_16271]]
-** in-silico_annotation
+*** [[Tiso_gene_5468]]
-***ec-number
+*** [[Tiso_gene_20311]]
-* [[RXN-10915]]
+*** [[Tiso_gene_14664]]
-** in-silico_annotation
+*** [[Tiso_gene_15391]]
-***ec-number
+*** [[Tiso_gene_14212]]
-* [[RXN-12448]]
+*** [[Tiso_gene_10516]]
-** in-silico_annotation
+*** [[Tiso_gene_9923]]
-***ec-number
+*** [[Tiso_gene_2667]]
-* [[RXN-12560]]
+** 7 reconstruction source(s) associated:
-** in-silico_annotation
+*** [[annotation-experimental_annotation]]
-***ec-number
+*** [[orthology-esiliculosus]]
-* [[RXN-13198]]
+*** [[annotation-in-silico_annotation]]
-** in-silico_annotation
+*** [[orthology-athaliana]]
-***ec-number
+*** [[orthology-synechocystis]]
-* [[RXN-13279]]
+*** [[manual-primary_network]]
-** in-silico_annotation
+*** [[orthology-creinhardtii]]
-***ec-number
+* [[F16ALDOLASE-RXN]]
-* [[RXN-5424]]
+** 6 associated gene(s):
-** in-silico_annotation
+*** [[Tiso_gene_12272]]
-***ec-number
+*** [[Tiso_gene_65]]
-* [[RXN-5901]]
+*** [[Tiso_gene_9119]]
-** in-silico_annotation
+*** [[Tiso_gene_14568]]
-***ec-number
+*** [[Tiso_gene_9179]]
-* [[RXN-7644]]
+*** [[Tiso_gene_9118]]
-** in-silico_annotation
+** 5 reconstruction source(s) associated:
-***ec-number
+*** [[annotation-in-silico_annotation]]
-* [[RXN-7657]]
+*** [[manual-primary_network]]
-** in-silico_annotation
+*** [[orthology-creinhardtii]]
-***ec-number
+*** [[orthology-esiliculosus]]
-* [[RXN-7693]]
+*** [[annotation-experimental_annotation]]
-** in-silico_annotation
+* [[PEPDEPHOS-RXN]]
-***ec-number
+** 4 associated gene(s):
-* [[RXN-7694]]
+*** [[Tiso_gene_18206]]
-** in-silico_annotation
+*** [[Tiso_gene_14504]]
-***ec-number
+*** [[Tiso_gene_974]]
-* [[RXN-7700]]
+*** [[Tiso_gene_14505]]
-** in-silico_annotation
+** 7 reconstruction source(s) associated:
-***ec-number
+*** [[annotation-experimental_annotation]]
-* [[RXN-7706]]
+*** [[orthology-esiliculosus]]
-** in-silico_annotation
+*** [[annotation-in-silico_annotation]]
-***ec-number
+*** [[orthology-athaliana]]
-* [[RXN3O-4113]]
+*** [[orthology-synechocystis]]
-** in-silico_annotation
+*** [[manual-primary_network]]
-***ec-number
+*** [[orthology-creinhardtii]]
-* [[RXN66-478]]
+* [[PGLUCISOM-RXN]]
-** in-silico_annotation
+** 1 associated gene(s):
-***ec-number
+*** [[Tiso_gene_19480]]
-== Pathways associated ==
+** 3 reconstruction source(s) associated:
-* [[PWY66-21]]
+*** [[annotation-experimental_annotation]]
-* [[PWY-7111]]
+*** [[annotation-in-silico_annotation]]
-* [[PWY-6587]]
+*** [[orthology-esiliculosus]]
-* [[PWY-5676]]
+* [[TRIOSEPISOMERIZATION-RXN]]
-* [[PWY-5082]]
+** 4 associated gene(s):
-* [[PWY-7118]]
+*** [[Tiso_gene_19961]]
-* [[PWY-7013]]
+*** [[Tiso_gene_20000]]
-* [[PWY-3162]]
+*** [[Tiso_gene_19962]]
-* [[PWY-5751]]
+*** [[Tiso_gene_10646]]
-* [[PWY-6342]]
+** 7 reconstruction source(s) associated:
-* [[PWY1-3]]
+*** [[annotation-experimental_annotation]]
-* [[P161-PWY]]
+*** [[orthology-esiliculosus]]
-* [[ETOH-ACETYLCOA-ANA-PWY]]
+*** [[annotation-in-silico_annotation]]
-* [[FERMENTATION-PWY]]
+*** [[orthology-athaliana]]
-* [[PWY-6871]]
+*** [[orthology-synechocystis]]
-* [[PWY-7396]]
+*** [[manual-primary_network]]
-* [[PWY-5057]]
+*** [[orthology-creinhardtii]]
-* [[PWY-5741]]
+== Reaction(s) not found ==
-* [[PWY-5076]]
+* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
-* [[PWY-6333]]
+* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
-* [[PWY-5486]]
+* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17001 RXN-17001]
-* [[PWY-5079]]
-* [[PWY-5078]]
-* [[PWY-6313]]
-* [[PWY66-425]]
-* [[PWY-5480]]
-* [[PWY3O-4108]]
-* [[PWY-7216]]
-* [[PWY-6802]]
-* [[LYSINE-DEG1-PWY]]
-* [[P122-PWY]]
-* [[PWY66-389]]
-* [[PWY4LZ-257]]
-* [[PWY-4101]]
 == External links  ==
-{{#set: left end position=7226}}
+{{#set: taxonomic range=TAX-2157}}
-{{#set: transcription direction=NEGATIVE}}
+{{#set: common name=glycolysis V (Pyrococcus)}}
-{{#set: right end position=9247}}
+{{#set: common name=archaeal Embden-Meyerhof pathway|archaeal Embden-Meyerhof-Parnas pathway|archaeal EMP pathway}}
-{{#set: centisome position=53.57752    }}
+{{#set: reaction found=6}}
-{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN3O-4113|RXN66-478}}
+{{#set: total reaction=9}}
-{{#set: pathway associated=PWY66-21|PWY-7111|PWY-6587|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|FERMENTATION-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
+{{#set: completion rate=67.0}}

Difference between revisions of "URIDINE"

Revision as of 14:53, 21 March 2018

Contents

Pathway P341-PWY

Reaction(s) found

Reaction(s) not found

External links

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