Difference between revisions of "Trans-delta2-lignoceroyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.2.23-RXN 3.2.2.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-d...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5924 PWY-5924] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.2.23-RXN 3.2.2.23-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5924 PWY-5924] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** formamidopyrimidine-dna_glycosylase
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** limonene degradation II (L-limonene)
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** endonuclease_iii_8-oxoguanine_dna_glycosylase_isoform_1b
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** n-glycosylase_dna_lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.2.23 EC-3.2.2.23]
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* Synonym(s):
 
* Synonym(s):
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** (-)-limonene degradation
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** (-)-(4S)-limonene degradation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''7''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[DNA-containing-diamino-hydro-formamidops]][c] '''=>''' 1 [[CPD-16491]][c] '''+''' 1 [[DNA-containing-aPurinic-Sites]][c]
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* [[RXN-9413]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 a ring-opened 7-methylguanine in DNA[c] '''=>''' 1 2,6-diamino-4-hydroxy-5-(N-methyl)formamidopyrimidine[c] '''+''' 1 an apurinic site within DNA[c]
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*** [[Tiso_gene_15422]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_1280]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9409 RXN-9409]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9411 RXN-9411]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9416 RXN-9416]
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* [[Tiso_gene_9068]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9418 RXN-9418]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9423 RXN-9423]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9948 RXN-9948]
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* [[Tiso_gene_16992]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14609]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6558]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P44948 P44948]
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{{#set: common name=limonene degradation II (L-limonene)}}
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** [http://www.uniprot.org/uniprot/P57014 P57014]
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{{#set: common name=(-)-limonene degradation|(-)-(4S)-limonene degradation}}
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** [http://www.uniprot.org/uniprot/P05523 P05523]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P19210 P19210]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P74290 P74290]
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{{#set: completion rate=14.0}}
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** [http://www.uniprot.org/uniprot/O69470 O69470]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=formamidopyrimidine-dna_glycosylase}}
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{{#set: common name=endonuclease_iii_8-oxoguanine_dna_glycosylase_isoform_1b}}
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{{#set: common name=n-glycosylase_dna_lyase}}
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{{#set: ec number=EC-3.2.2.23}}
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{{#set: gene associated=Tiso_gene_1280|Tiso_gene_9068|Tiso_gene_16992|Tiso_gene_14609|Tiso_gene_6558}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:55, 21 March 2018

Pathway PWY-5924

  • taxonomic range:
  • common name:
    • limonene degradation II (L-limonene)
  • Synonym(s):
    • (-)-limonene degradation
    • (-)-(4S)-limonene degradation

Reaction(s) found

1 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Trans-delta2-lignoceroyl-ACPs&oldid=31170"