Difference between revisions of "Tiso gene 15772"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IVCDH IVCDH] == * direction: ** LEFT-TO-RIGHT * common name: ** isovaleryl-coa dehydrogenase * Syno...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-2...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IVCDH IVCDH] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-28889]
 
* common name:
 
* common name:
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** isovaleryl-coa dehydrogenase
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** 3-hydroxypropanoate/4-hydroxybutanate cycle
 
* Synonym(s):
 
* Synonym(s):
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** 3-HP/4-HB cycle
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** 3-hydroxypropionate/4-hydroxybutyrate cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''16''' reactions in the full pathway
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** 1.0 [[FAD]][m] '''+''' 1.0 [[ISOVALERYL-COA]][m] '''=>''' 1.0 [[3-METHYL-CROTONYL-COA]][m] '''+''' 1.0 [[FADH2]][m]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1.0 FAD[m] '''+''' 1.0 isovaleryl-CoA[m] '''=>''' 1.0 3-methylcrotonyl-CoA[m] '''+''' 1.0 FADH2[m]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_15327]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17451]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_10643]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_16113]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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== Reconstruction information  ==
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** 4 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_2812]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_3800]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_7965]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[METHYLMALONYL-COA-MUT-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_9771]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5029]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-11002]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN-11662]]
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** 7 associated gene(s):
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*** [[Tiso_gene_16703]]
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*** [[Tiso_gene_14027]]
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*** [[Tiso_gene_14262]]
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*** [[Tiso_gene_14026]]
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*** [[Tiso_gene_18838]]
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*** [[Tiso_gene_18839]]
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*** [[Tiso_gene_5857]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11667]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5857]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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* [[RXN-6383]]
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** 3 associated gene(s):
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_16703]]
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*** [[Tiso_gene_14257]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8891 RXN-8891]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9092 RXN-9092]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-28889}}
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{{#set: common name=isovaleryl-coa dehydrogenase}}
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{{#set: common name=3-hydroxypropanoate/4-hydroxybutanate cycle}}
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{{#set: gene associated=Tiso_gene_10643|Tiso_gene_16113}}
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{{#set: common name=3-HP/4-HB cycle|3-hydroxypropionate/4-hydroxybutyrate cycle}}
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{{#set: in pathway=}}
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{{#set: reaction found=8}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=16}}
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{{#set: reconstruction source=orthology-creinhardtii}}
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{{#set: completion rate=50.0}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:56, 21 March 2018

Pathway PWY-5789

  • taxonomic range:
  • common name:
    • 3-hydroxypropanoate/4-hydroxybutanate cycle
  • Synonym(s):
    • 3-HP/4-HB cycle
    • 3-hydroxypropionate/4-hydroxybutyrate cycle

Reaction(s) found

8 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15772&oldid=31307"