Difference between revisions of "PWY-7657"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-2-oxobutanoa...")
(Created page with "Category:Gene == Gene Tiso_gene_2142 == * right end position: ** 8691 * transcription direction: ** POSITIVE * left end position: ** 5697 * centisome position: ** 25.41148...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.25-RXN 1.2.1.25-RXN] ==
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== Gene Tiso_gene_2142 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8691
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* common name:
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* transcription direction:
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** 3-methyl-2-oxobutanoate_dehydrogenase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.2.1.25 EC-1.2.1.25]
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** 5697
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* centisome position:
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** 25.41148   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-1225]]
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** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c] '''+''' 1 [[NADH]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''=>''' 1 CO2[c] '''+''' 1 isobutanoyl-CoA[c] '''+''' 1 NADH[c]
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* Reaction: [[RXN-1226]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-16634]]
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* [[Tiso_gene_3260]]
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-16635]]
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* [[Tiso_gene_11793]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-18302]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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*** Assignment: ec-number
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* Reaction: [[RXN-9721]]
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7840]]
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* [[PWY-401]]
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* [[PWY-7666]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8691}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13997 13997]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5697}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01210 R01210]
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{{#set: centisome position=25.41148    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-1225|RXN-1226|RXN-16634|RXN-16635|RXN-18302|RXN-9721}}
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{{#set: common name=3-methyl-2-oxobutanoate_dehydrogenase}}
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{{#set: pathway associated=PWY-7840|PWY-401|PWY-7666}}
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{{#set: ec number=EC-1.2.1.25}}
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{{#set: gene associated=Tiso_gene_3260|Tiso_gene_11793}}
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{{#set: in pathway=VALDEG-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:57, 21 March 2018

Gene Tiso_gene_2142

  • right end position:
    • 8691
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5697
  • centisome position:
    • 25.41148
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7657&oldid=31400"