Difference between revisions of "CPD-13612"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] == * direction: ** REVERSIBLE * co...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** cysteine
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** D-galacturonate degradation I
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.22 EC-4.2.1.22]
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* Synonym(s):
 
* Synonym(s):
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** D-galacturonate catabolism
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** D-galacturonate degradation
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''5''' reactions in the full pathway
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** 1 [[SER]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[L-CYSTATHIONINE]][c]
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* [[GALACTUROISOM-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 L-serine[c] '''+''' 1 L-homocysteine[c] '''<=>''' 1 H2O[c] '''+''' 1 L-cystathionine[c]
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*** [[Tiso_gene_19097]]
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*** [[Tiso_gene_8329]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_7852]]
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* [[KDPGALDOL-RXN]]
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** IN-SILICO_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_12620]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_3732]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Reaction(s) not found ==
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ALTRO-OXIDOREDUCT-RXN ALTRO-OXIDOREDUCT-RXN]
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* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALTRODEHYDRAT-RXN ALTRODEHYDRAT-RXN]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
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* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-801]], L-homocysteine and L-cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10112 10112]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290]
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{{#set: common name=D-galacturonate degradation I}}
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* UNIPROT:
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{{#set: common name=D-galacturonate catabolism|D-galacturonate degradation}}
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** [http://www.uniprot.org/uniprot/P32232 P32232]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P32582 P32582]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P35520 P35520]
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{{#set: completion rate=40.0}}
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** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5]
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** [http://www.uniprot.org/uniprot/Q12633 Q12633]
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** [http://www.uniprot.org/uniprot/P72662 P72662]
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** [http://www.uniprot.org/uniprot/O59701 O59701]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=cysteine}}
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{{#set: ec number=EC-4.2.1.22}}
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{{#set: gene associated=Tiso_gene_7852|Tiso_gene_3732}}
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{{#set: in pathway=HOMOCYSDEGR-PWY|PWY-I9|PWY-801}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:57, 21 March 2018

Pathway GALACTUROCAT-PWY

  • taxonomic range:
  • common name:
    • D-galacturonate degradation I
  • Synonym(s):
    • D-galacturonate catabolism
    • D-galacturonate degradation

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




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