Difference between revisions of "RXN-17779"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14799 RXN-14799] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14799 RXN-14799] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** thiolase
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** gondoate biosynthesis (anaerobic)
** acetyl-_c-acetyltransferase
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** 3-ketoacyl-_thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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* Synonym(s):
 
* Synonym(s):
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** cis-11-icosenoate biosynthesis
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** (11Z)-icos-11-enoate biosynthesis
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** (11Z)-icosenoate biosynthesis
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** gondoic acid biosynthesis
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** 11-eicosenoic acid biosynthesis
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''4''' reactions in the full pathway
** 1 [[CPD-15687]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15688]][c]
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* [[RXN-16629]]
* With common name(s):
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** 1 associated gene(s):
** 1 5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 3-cis, 5-trans-dodecadienoyl-CoA[c]
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*** [[Tiso_gene_5939]]
 
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** 2 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_10116]]
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* [[RXN-16630]]
** IN-SILICO_ANNOTATION
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** 2 associated gene(s):
***EC-NUMBER
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*** [[Tiso_gene_9885]]
** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_13083]]
***EC-NUMBER
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** 2 reconstruction source(s) associated:
* [[Tiso_gene_3856]]
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*** [[annotation-in-silico_annotation]]
** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
***EC-NUMBER
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* [[RXN-16631]]
* [[Tiso_gene_15327]]
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** 1 associated gene(s):
** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_6884]]
***EC-NUMBER
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** 1 reconstruction source(s) associated:
* [[Tiso_gene_17451]]
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*** [[annotation-experimental_annotation]]
** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16632 RXN-16632]
** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7340]], 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7340 PWY-7340]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
{{#set: common name=thiolase}}
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{{#set: common name=gondoate biosynthesis (anaerobic)}}
{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=cis-11-icosenoate biosynthesis|(11Z)-icos-11-enoate biosynthesis|(11Z)-icosenoate biosynthesis|gondoic acid biosynthesis|11-eicosenoic acid biosynthesis}}
{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: reaction found=3}}
{{#set: ec number=EC-2.3.1.16}}
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{{#set: total reaction=4}}
{{#set: gene associated=Tiso_gene_10116|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_17451|Tiso_gene_3855}}
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{{#set: completion rate=75.0}}
{{#set: in pathway=PWY-7340}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:57, 21 March 2018

Pathway PWY-7663

  • taxonomic range:
  • common name:
    • gondoate biosynthesis (anaerobic)
  • Synonym(s):
    • cis-11-icosenoate biosynthesis
    • (11Z)-icos-11-enoate biosynthesis
    • (11Z)-icosenoate biosynthesis
    • gondoic acid biosynthesis
    • 11-eicosenoic acid biosynthesis

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links