Difference between revisions of "RXN-9634"

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(Created page with "Category:Gene == Gene Tiso_gene_10077 == * left end position: ** 11427 * transcription direction: ** NEGATIVE * right end position: ** 13024 * centisome position: ** 74.57...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate_de...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_10077 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
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* left end position:
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* direction:
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** 11427
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** isopentenyl-diphosphate_delta-isomerase
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* right end position:
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* ec number:
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** 13024
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** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
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* centisome position:
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** 74.57417   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[R03845]]
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* With identifiers:
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** [[pantograph]]-[[synechocystis]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
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* [[RXN-5285]]
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* With common name(s):
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** in-silico_annotation
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** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
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***ec-number
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** experimental_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_8653]]
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* [[RXN1F-10]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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== Pathways  ==
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** experimental_annotation
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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***ec-number
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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== Pathways associated ==
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]]
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=11427}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
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{{#set: right end position=13024}}
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* LIGAND-RXN:
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{{#set: centisome position=74.57417    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
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{{#set: reaction associated=R03845|RXN-5285|RXN1F-10}}
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* UNIPROT:
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{{#set: pathway associated=CHLOROPHYLL-SYN}}
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** [http://www.uniprot.org/uniprot/P15496 P15496]
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** [http://www.uniprot.org/uniprot/Q10132 Q10132]
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** [http://www.uniprot.org/uniprot/Q38929 Q38929]
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** [http://www.uniprot.org/uniprot/Q42553 Q42553]
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** [http://www.uniprot.org/uniprot/P93355 P93355]
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** [http://www.uniprot.org/uniprot/O81691 O81691]
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** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
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** [http://www.uniprot.org/uniprot/O81660 O81660]
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** [http://www.uniprot.org/uniprot/O81659 O81659]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=isopentenyl-diphosphate_delta-isomerase}}
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{{#set: ec number=EC-5.3.3.2}}
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{{#set: gene associated=Tiso_gene_8653}}
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{{#set: in pathway=PWY-6174|PWY-922|PWY-6859|NONMEVIPP-PWY|PWY-7102|PWY-7391|PWY-5123|PWY-7560|PWY-6383|PWY-7524}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:58, 21 March 2018

Reaction IPPISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isopentenyl-diphosphate_delta-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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