Difference between revisions of "CPD-13935"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.4.3.19-RXN 1.4.3.19-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5047 PWY-5047] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.4.3.19-RXN 1.4.3.19-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5047 PWY-5047] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.4.3.19 EC-1.4.3.19]
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** gibberellin biosynthesis IV (Gibberella fujikuroi)
 
* Synonym(s):
 
* Synonym(s):
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** GA3 biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''15''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[GLYOX]][c]
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* [[1.14.13.78-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 glycine[c] '''+''' 1 oxygen[c] '''=>''' 1 ammonium[c] '''+''' 1 hydrogen peroxide[c] '''+''' 1 glyoxylate[c]
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*** [[Tiso_gene_1547]]
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*** [[Tiso_gene_8263]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_13537]]
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* [[1.14.13.79-RXN]]
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** [[pantograph]]-[[synechocystis]]
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** 2 associated gene(s):
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* [[Tiso_gene_16652]]
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*** [[Tiso_gene_8263]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_3577]]
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* [[Tiso_gene_11756]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-5242]]
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* [[PWY-7396]], butanol and isobutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7396 PWY-7396]
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** 2 associated gene(s):
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** '''4''' reactions found over '''8''' reactions in the full pathway
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*** [[Tiso_gene_8263]]
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== Reconstruction information  ==
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*** [[Tiso_gene_1547]]
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* Category: [[orthology]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* [[RXN-7580]]
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** 2 associated gene(s):
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*** [[Tiso_gene_1547]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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* [[RXN1F-160]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN1F-161]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6545 RXN-6545]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6549 RXN-6549]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7617 RXN-7617]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7619 RXN-7619]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7621 RXN-7621]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7624 RXN-7624]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7625 RXN-7625]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7634 RXN-7634]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-166 RXN1F-166]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11532 11532]
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{{#set: common name=gibberellin biosynthesis IV (Gibberella fujikuroi)}}
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* LIGAND-RXN:
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{{#set: common name=GA3 biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00366 R00366]
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{{#set: reaction found=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=15}}
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{{#set: ec number=EC-1.4.3.19}}
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{{#set: completion rate=40.0}}
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{{#set: gene associated=Tiso_gene_13537|Tiso_gene_16652|Tiso_gene_11756}}
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{{#set: in pathway=PWY-7396}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:58, 21 March 2018

Pathway PWY-5047

  • taxonomic range:
  • common name:
    • gibberellin biosynthesis IV (Gibberella fujikuroi)
  • Synonym(s):
    • GA3 biosynthesis

Reaction(s) found

6 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-13935&oldid=31526"