Difference between revisions of "Tiso gene 8110"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s):...")
(Created page with "Category:Gene == Gene Tiso_gene_11030 == * right end position: ** 7072 * transcription direction: ** POSITIVE * left end position: ** 5202 * centisome position: ** 64.1509...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] ==
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== Gene Tiso_gene_11030 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7072
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* transcription direction:
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** POSITIVE
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* left end position:
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** 5202
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* centisome position:
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** 64.15094   
 
* Synonym(s):
 
* Synonym(s):
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** uroporphyrinogen methyltransferase
 
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** uroporphyrinogen-III methyltransferase
 
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** adenosylmethionine-uroporphyrinogen III methyltransferase
 
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** S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase
 
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** SirA
 
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** CysG
 
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** uroporphyrin-III C-methyltransferase (incorrect)
 
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** S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[AMCL]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[CPD-9038]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[SAMDECARB-RXN]]
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 1 precorrin-1[c] '''+''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8614]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
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** '''2''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[ARGSPECAT-PWY]]
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* [[BSUBPOLYAMSYN-PWY]]
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* [[PWY-6834]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7072}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19089 19089]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5202}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07237 R07237]
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{{#set: centisome position=64.15094    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=AMCL|SAMDECARB-RXN}}
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{{#set: common name=uroporphyrinogen methyltransferase|uroporphyrinogen-III methyltransferase|adenosylmethionine-uroporphyrinogen III methyltransferase|S-adenosyl-L-methionine-dependent uroporphyrinogen III methylase|SirA|CysG|uroporphyrin-III C-methyltransferase (incorrect)|S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase (incorrect)}}
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{{#set: pathway associated=ARGSPECAT-PWY|BSUBPOLYAMSYN-PWY|PWY-6834}}
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{{#set: gene associated=Tiso_gene_8614}}
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{{#set: in pathway=PWY-7376|PWY-7377|PWY-5194|PWY-5196}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 14:58, 21 March 2018

Gene Tiso_gene_11030

  • right end position:
    • 7072
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5202
  • centisome position:
    • 64.15094
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8110&oldid=31548"