Difference between revisions of "Purine-Bases"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-305 RXN66-305] == * direction: ** LEFT-TO-RIGHT * common name: ** 14-oxolanosterol deformylas...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-305 RXN66-305] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 14-oxolanosterol deformylase
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** L-arginine biosynthesis III (via N-acetyl-L-citrulline)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-4573]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[44-DIMETHYL-CHOLESTA-812-24-TRIENOL]][c] '''+''' 1 [[FORMATE]][c]
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* [[ACETYLGLUTKIN-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 NADPH[c] '''+''' 1 oxygen[c] '''+''' 1 14-oxolanosterol[c] '''=>''' 1 NADP+[c] '''+''' 1 H2O[c] '''+''' 1 4,4-dimethyl-cholesta-8,12,24-trienol[c] '''+''' 1 formate[c]
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*** [[Tiso_gene_13144]]
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** 5 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_8263]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-synechocystis]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[PWY66-341]], cholesterol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-341 PWY66-341]
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* [[ACETYLORNTRANSAM-RXN]]
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** '''8''' reactions found over '''22''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-4 PWY66-4]
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*** [[Tiso_gene_11231]]
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** '''7''' reactions found over '''22''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* Category: [[orthology]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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* [[ARGSUCCINLYA-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_2485]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ARGSUCCINSYN-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_12592]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[CARBPSYN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_4976]]
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*** [[Tiso_gene_4975]]
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*** [[Tiso_gene_4685]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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* [[N-ACETYLGLUTPREDUCT-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_8102]]
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*** [[Tiso_gene_6700]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[N-ACETYLTRANSFER-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11663]]
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*** [[Tiso_gene_5365]]
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** 4 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.3.9-RXN 2.1.3.9-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7933 RXN-7933]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=14-oxolanosterol deformylase}}
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{{#set: common name=L-arginine biosynthesis III (via N-acetyl-L-citrulline)}}
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{{#set: gene associated=Tiso_gene_8263}}
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{{#set: reaction found=7}}
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{{#set: in pathway=PWY66-341|PWY66-4}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=78.0}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph}}
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Revision as of 16:01, 21 March 2018

Pathway PWY-5154

  • taxonomic range:
  • common name:
    • L-arginine biosynthesis III (via N-acetyl-L-citrulline)
  • Synonym(s):

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Purine-Bases&oldid=31826"