Difference between revisions of "PWY-7666"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARYLSULFAT-RXN ARYLSULFAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** sulfatase * ec nu...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARYLSULFAT-RXN ARYLSULFAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** sulfatase
+
** polyketide_synthase
 +
** ORF
 +
** long_chain_acyl-_synthetase
 +
** acyl-_synthetase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.6.1 EC-3.1.6.1]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Aryl-Sulfate]][c] '''=>''' 1 [[SULFATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Aryl-Alcohol]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a phenol sulfate[c] '''=>''' 1 sulfate[c] '''+''' 1 H+[c] '''+''' 1 a phenol[c]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 stearate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 stearoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5811]]
+
* Gene: [[Tiso_gene_10876]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_7286]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_9394]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_9519]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_15834]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_136]]
−
* [[Tiso_gene_11338]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_12275]]
−
* [[Tiso_gene_15833]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_7855]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15619]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01243 R01243]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P50473 P50473]
 
−
** [http://www.uniprot.org/uniprot/P20713 P20713]
 
−
** [http://www.uniprot.org/uniprot/P14217 P14217]
 
−
** [http://www.uniprot.org/uniprot/P14000 P14000]
 
−
** [http://www.uniprot.org/uniprot/P25549 P25549]
 
−
** [http://www.uniprot.org/uniprot/P28607 P28607]
 
−
** [http://www.uniprot.org/uniprot/Q10723 Q10723]
 
−
** [http://www.uniprot.org/uniprot/P50474 P50474]
 
−
** [http://www.uniprot.org/uniprot/Q9X759 Q9X759]
 
−
** [http://www.uniprot.org/uniprot/O43113 O43113]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=sulfatase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-3.1.6.1}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_5811|Tiso_gene_7286|Tiso_gene_9519|Tiso_gene_15834|Tiso_gene_11338|Tiso_gene_15833|Tiso_gene_15619}}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: in pathway=}}
+
{{#set: common name=acyl-_synthetase}}
 +
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_136|Tiso_gene_12275|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_348|Tiso_gene_4191|Tiso_gene_135}}
 +
{{#set: in pathway=PWY-5989}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:02, 21 March 2018

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 stearate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 stearoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7666&oldid=31971"