Difference between revisions of "HISTCYCLOHYD-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-_c-acetyltransferase...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** acetyl-_c-acetyltransferase
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** retinol biosynthesis
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** 3-ketoacyl-_thiolase
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** thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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* Synonym(s):
 
* Synonym(s):
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** vitamin A biosynthesis
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** retinal biosynthesis
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** retinoid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
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** 1 [[CPD-13699]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-13700]][c] '''+''' 1 [[ACETYL-COA]][c]
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* [[RXN-12575]]
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* With common name(s):
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** 13 associated gene(s):
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** 1 3,22-dioxochol-4-en-24-oyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 3-oxo-4-pregnene-20-carboxyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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*** [[Tiso_gene_11351]]
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*** [[Tiso_gene_1537]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_4606]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_17029]]
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* [[Tiso_gene_15327]]
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*** [[Tiso_gene_1538]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_9429]]
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***EC-NUMBER
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*** [[Tiso_gene_19778]]
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* [[Tiso_gene_3855]]
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*** [[Tiso_gene_4650]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_12686]]
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***EC-NUMBER
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*** [[Tiso_gene_10066]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_16518]]
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***EC-NUMBER
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*** [[Tiso_gene_1922]]
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* [[Tiso_gene_3856]]
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*** [[Tiso_gene_2556]]
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** IN-SILICO_ANNOTATION
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** 3 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_10116]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-12579]]
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** EXPERIMENTAL_ANNOTATION
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** 23 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_2108]]
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* [[Tiso_gene_17451]]
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*** [[Tiso_gene_17612]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_3215]]
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***EC-NUMBER
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*** [[Tiso_gene_17639]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_11437]]
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***EC-NUMBER
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*** [[Tiso_gene_8902]]
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== Pathways  ==
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*** [[Tiso_gene_17613]]
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* [[PWY-6948]], sitosterol degradation to androstenedione: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6948 PWY-6948]
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*** [[Tiso_gene_9140]]
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** '''2''' reactions found over '''18''' reactions in the full pathway
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*** [[Tiso_gene_288]]
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* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
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*** [[Tiso_gene_17614]]
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** '''3''' reactions found over '''22''' reactions in the full pathway
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*** [[Tiso_gene_2109]]
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* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
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*** [[Tiso_gene_14063]]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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*** [[Tiso_gene_16817]]
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== Reconstruction information  ==
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*** [[Tiso_gene_14062]]
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* Category: [[annotation]]
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*** [[Tiso_gene_17143]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_7915]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_14109]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_5716]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_2983]]
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*** [[Tiso_gene_905]]
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*** [[Tiso_gene_19184]]
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*** [[Tiso_gene_14064]]
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*** [[Tiso_gene_906]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-13374]]
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** 4 associated gene(s):
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*** [[Tiso_gene_13078]]
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*** [[Tiso_gene_4653]]
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*** [[Tiso_gene_7740]]
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*** [[Tiso_gene_13079]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.135-RXN 2.3.1.135-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10841 RXN-10841]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12548 RXN-12548]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12549 RXN-12549]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=retinol biosynthesis}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: common name=vitamin A biosynthesis|retinal biosynthesis|retinoid biosynthesis}}
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{{#set: common name=thiolase}}
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{{#set: reaction found=3}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: total reaction=7}}
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{{#set: gene associated=Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_17451}}
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{{#set: completion rate=43.0}}
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{{#set: in pathway=PWY-6948|PWY-6946|PWY-6945}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:03, 21 March 2018

Pathway PWY-6857

  • taxonomic range:
  • common name:
    • retinol biosynthesis
  • Synonym(s):
    • vitamin A biosynthesis
    • retinal biosynthesis
    • retinoid biosynthesis

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HISTCYCLOHYD-RXN&oldid=32055"