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| Line 1: |
Line 1: |
| | [[Category:Pathway]] | | [[Category:Pathway]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750] == |
| | * taxonomic range: | | * taxonomic range: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157] | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751] |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
| + | |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
| + | |
| | * common name: | | * common name: |
| − | ** pyrimidine deoxyribonucleotides de novo biosynthesis I | + | ** itaconate biosynthesis |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| | == Reaction(s) found == | | == Reaction(s) found == |
| − | '''9''' reactions found over '''9''' reactions in the full pathway | + | '''3''' reactions found over '''4''' reactions in the full pathway |
| − | * [[CDPREDUCT-RXN]] | + | * [[ACONITATEDEHYDR-RXN]] |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_10617]]
| + | |
| − | *** [[Tiso_gene_9916]]
| + | |
| − | *** [[Tiso_gene_9915]]
| + | |
| − | *** [[Tiso_gene_10138]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DCDPKIN-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_9290]]
| + | |
| − | *** [[Tiso_gene_18224]]
| + | |
| − | *** [[Tiso_gene_17272]]
| + | |
| − | *** [[Tiso_gene_16529]]
| + | |
| − | *** [[Tiso_gene_17271]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DTDPKIN-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18224]]
| + | |
| − | *** [[Tiso_gene_16529]]
| + | |
| − | *** [[Tiso_gene_195]]
| + | |
| − | *** [[Tiso_gene_17271]]
| + | |
| − | *** [[Tiso_gene_17272]]
| + | |
| − | *** [[Tiso_gene_9290]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[DTMPKI-RXN]]
| + | |
| | ** 1 associated gene(s): | | ** 1 associated gene(s): |
| − | *** [[Tiso_gene_3755]] | + | *** [[Tiso_gene_13007]] |
| | ** 3 reconstruction source(s) associated: | | ** 3 reconstruction source(s) associated: |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[manual-primary_network]]
| |
| | *** [[annotation-experimental_annotation]] | | *** [[annotation-experimental_annotation]] |
| − | * [[DUDPKIN-RXN]]
| |
| − | ** 6 associated gene(s):
| |
| − | *** [[Tiso_gene_17272]]
| |
| − | *** [[Tiso_gene_17271]]
| |
| − | *** [[Tiso_gene_9290]]
| |
| − | *** [[Tiso_gene_16529]]
| |
| − | *** [[Tiso_gene_18224]]
| |
| − | *** [[Tiso_gene_195]]
| |
| − | ** 6 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| − | *** [[orthology-esiliculosus]]
| |
| | *** [[annotation-in-silico_annotation]] | | *** [[annotation-in-silico_annotation]] |
| − | *** [[orthology-athaliana]]
| |
| | *** [[orthology-synechocystis]] | | *** [[orthology-synechocystis]] |
| − | *** [[manual-primary_network]]
| + | * [[CITSYN-RXN]] |
| − | * [[DUTP-PYROP-RXN]]
| + | ** 4 associated gene(s): |
| − | ** 2 associated gene(s): | + | *** [[Tiso_gene_18030]] |
| − | *** [[Tiso_gene_18793]] | + | *** [[Tiso_gene_9601]] |
| − | *** [[Tiso_gene_18792]] | + | *** [[Tiso_gene_9603]] |
| | + | *** [[Tiso_gene_9602]] |
| | ** 3 reconstruction source(s) associated: | | ** 3 reconstruction source(s) associated: |
| − | *** [[orthology-athaliana]]
| + | *** [[annotation-experimental_annotation]] |
| − | *** [[annotation-in-silico_annotation]] | + | |
| | *** [[manual-primary_network]] | | *** [[manual-primary_network]] |
| − | * [[RXN-12195]]
| |
| − | ** 101 associated gene(s):
| |
| − | *** [[Tiso_gene_8860]]
| |
| − | *** [[Tiso_gene_11098]]
| |
| − | *** [[Tiso_gene_1960]]
| |
| − | *** [[Tiso_gene_1611]]
| |
| − | *** [[Tiso_gene_3653]]
| |
| − | *** [[Tiso_gene_12899]]
| |
| − | *** [[Tiso_gene_1444]]
| |
| − | *** [[Tiso_gene_2924]]
| |
| − | *** [[Tiso_gene_8949]]
| |
| − | *** [[Tiso_gene_17616]]
| |
| − | *** [[Tiso_gene_546]]
| |
| − | *** [[Tiso_gene_14226]]
| |
| − | *** [[Tiso_gene_4026]]
| |
| − | *** [[Tiso_gene_14646]]
| |
| − | *** [[Tiso_gene_2447]]
| |
| − | *** [[Tiso_gene_674]]
| |
| − | *** [[Tiso_gene_5166]]
| |
| − | *** [[Tiso_gene_195]]
| |
| − | *** [[Tiso_gene_8601]]
| |
| − | *** [[Tiso_gene_4596]]
| |
| − | *** [[Tiso_gene_13738]]
| |
| − | *** [[Tiso_gene_5525]]
| |
| − | *** [[Tiso_gene_538]]
| |
| − | *** [[Tiso_gene_2449]]
| |
| − | *** [[Tiso_gene_19098]]
| |
| − | *** [[Tiso_gene_12148]]
| |
| − | *** [[Tiso_gene_1291]]
| |
| − | *** [[Tiso_gene_20327]]
| |
| − | *** [[Tiso_gene_4436]]
| |
| − | *** [[Tiso_gene_7387]]
| |
| − | *** [[Tiso_gene_12149]]
| |
| − | *** [[Tiso_gene_2451]]
| |
| − | *** [[Tiso_gene_6614]]
| |
| − | *** [[Tiso_gene_199]]
| |
| − | *** [[Tiso_gene_9114]]
| |
| − | *** [[Tiso_gene_2450]]
| |
| − | *** [[Tiso_gene_14474]]
| |
| − | *** [[Tiso_gene_8461]]
| |
| − | *** [[Tiso_gene_4437]]
| |
| − | *** [[Tiso_gene_8584]]
| |
| − | *** [[Tiso_gene_4155]]
| |
| − | *** [[Tiso_gene_8164]]
| |
| − | *** [[Tiso_gene_572]]
| |
| − | *** [[Tiso_gene_9243]]
| |
| − | *** [[Tiso_gene_4330]]
| |
| − | *** [[Tiso_gene_9959]]
| |
| − | *** [[Tiso_gene_2897]]
| |
| − | *** [[Tiso_gene_623]]
| |
| − | *** [[Tiso_gene_9926]]
| |
| − | *** [[Tiso_gene_19350]]
| |
| − | *** [[Tiso_gene_6181]]
| |
| − | *** [[Tiso_gene_2631]]
| |
| − | *** [[Tiso_gene_2929]]
| |
| − | *** [[Tiso_gene_9423]]
| |
| − | *** [[Tiso_gene_16478]]
| |
| − | *** [[Tiso_gene_6180]]
| |
| − | *** [[Tiso_gene_1984]]
| |
| − | *** [[Tiso_gene_873]]
| |
| − | *** [[Tiso_gene_2452]]
| |
| − | *** [[Tiso_gene_15465]]
| |
| − | *** [[Tiso_gene_3287]]
| |
| − | *** [[Tiso_gene_4092]]
| |
| − | *** [[Tiso_gene_8763]]
| |
| − | *** [[Tiso_gene_9004]]
| |
| − | *** [[Tiso_gene_14816]]
| |
| − | *** [[Tiso_gene_5529]]
| |
| − | *** [[Tiso_gene_4192]]
| |
| − | *** [[Tiso_gene_7745]]
| |
| − | *** [[Tiso_gene_8859]]
| |
| − | *** [[Tiso_gene_829]]
| |
| − | *** [[Tiso_gene_4194]]
| |
| − | *** [[Tiso_gene_15043]]
| |
| − | *** [[Tiso_gene_14227]]
| |
| − | *** [[Tiso_gene_250]]
| |
| − | *** [[Tiso_gene_1541]]
| |
| − | *** [[Tiso_gene_537]]
| |
| − | *** [[Tiso_gene_9234]]
| |
| − | *** [[Tiso_gene_7123]]
| |
| − | *** [[Tiso_gene_10282]]
| |
| − | *** [[Tiso_gene_4726]]
| |
| − | *** [[Tiso_gene_20353]]
| |
| − | *** [[Tiso_gene_2448]]
| |
| − | *** [[Tiso_gene_38]]
| |
| − | *** [[Tiso_gene_11012]]
| |
| − | *** [[Tiso_gene_2176]]
| |
| − | *** [[Tiso_gene_17751]]
| |
| − | *** [[Tiso_gene_13325]]
| |
| − | *** [[Tiso_gene_7734]]
| |
| − | *** [[Tiso_gene_1959]]
| |
| − | *** [[Tiso_gene_13268]]
| |
| − | *** [[Tiso_gene_9659]]
| |
| − | *** [[Tiso_gene_8950]]
| |
| − | *** [[Tiso_gene_2068]]
| |
| − | *** [[Tiso_gene_14239]]
| |
| − | *** [[Tiso_gene_13264]]
| |
| − | *** [[Tiso_gene_2889]]
| |
| − | *** [[Tiso_gene_13681]]
| |
| − | *** [[Tiso_gene_1610]]
| |
| − | *** [[Tiso_gene_13653]]
| |
| − | *** [[Tiso_gene_17449]]
| |
| − | *** [[Tiso_gene_10221]]
| |
| − | ** 3 reconstruction source(s) associated:
| |
| − | *** [[annotation-experimental_annotation]]
| |
| | *** [[annotation-in-silico_annotation]] | | *** [[annotation-in-silico_annotation]] |
| − | *** [[orthology-esiliculosus]]
| + | * [[PYRUVATE-CARBOXYLASE-RXN]] |
| − | * [[THYMIDYLATESYN-RXN]]
| + | ** 3 associated gene(s): |
| − | ** 2 associated gene(s): | + | *** [[Tiso_gene_15144]] |
| − | *** [[Tiso_gene_18478]] | + | *** [[Tiso_gene_15145]] |
| − | *** [[Tiso_gene_7708]] | + | *** [[Tiso_gene_2812]] |
| − | ** 2 reconstruction source(s) associated: | + | ** 4 reconstruction source(s) associated: |
| | + | *** [[annotation-in-silico_annotation]] |
| | *** [[manual-primary_network]] | | *** [[manual-primary_network]] |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | * [[UDPREDUCT-RXN]]
| |
| − | ** 4 associated gene(s):
| |
| − | *** [[Tiso_gene_9915]]
| |
| − | *** [[Tiso_gene_10617]]
| |
| − | *** [[Tiso_gene_10138]]
| |
| − | *** [[Tiso_gene_9916]]
| |
| − | ** 6 reconstruction source(s) associated:
| |
| | *** [[annotation-experimental_annotation]] | | *** [[annotation-experimental_annotation]] |
| | *** [[orthology-esiliculosus]] | | *** [[orthology-esiliculosus]] |
| − | *** [[annotation-in-silico_annotation]]
| |
| − | *** [[orthology-athaliana]]
| |
| − | *** [[orthology-synechocystis]]
| |
| − | *** [[manual-primary_network]]
| |
| | == Reaction(s) not found == | | == Reaction(s) not found == |
| | + | * [http://metacyc.org/META/NEW-IMAGE?object=ACONITATE-DECARBOXYLASE-RXN ACONITATE-DECARBOXYLASE-RXN] |
| | == External links == | | == External links == |
| − | * ECOCYC:
| + | {{#set: taxonomic range=TAX-4751}} |
| − | ** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7184 PWY-7184]
| + | {{#set: common name=itaconate biosynthesis}} |
| − | {{#set: taxonomic range=TAX-2157}}
| + | {{#set: reaction found=3}} |
| − | {{#set: taxonomic range=TAX-2759}}
| + | {{#set: total reaction=4}} |
| − | {{#set: taxonomic range=TAX-2}} | + | {{#set: completion rate=75.0}} |
| − | {{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis I}} | + | |
| − | {{#set: reaction found=9}} | + | |
| − | {{#set: total reaction=9}} | + | |
| − | {{#set: completion rate=100.0}} | + | |
