Difference between revisions of "Tiso gene 10919"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CERAMIDASE-YEAST-RXN CERAMIDASE-YEAST-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://en...")
(Created page with "Category:Gene == Gene Tiso_gene_9290 == * right end position: ** 6446 * transcription direction: ** NEGATIVE * left end position: ** 2856 * centisome position: ** 30.18389...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CERAMIDASE-YEAST-RXN CERAMIDASE-YEAST-RXN] ==
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== Gene Tiso_gene_9290 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 6446
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.5.1.23 EC-3.5.1.23]
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** NEGATIVE
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* left end position:
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** 2856
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* centisome position:
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** 30.183893   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CDPKIN-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[Alpha-hydroxyphytoceramides]][c] '''<=>''' 1 [[PHYTOSPINGOSINE]][c] '''+''' 1 [[2-Hydroxy-Fatty-Acids]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 a (2'R)-2'-hydroxy-phytoceramide[c] '''<=>''' 1 phytosphingosine[c] '''+''' 1 a (2R)-2-hydroxy fatty acid[c]
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* Reaction: [[DADPKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[DCDPKIN-RXN]]
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* [[Tiso_gene_14341]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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== Pathways ==
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* Reaction: [[DGDPKIN-RXN]]
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* [[PWY-7119]], sphingolipid recycling and degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7119 PWY-7119]
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** Source: [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY66-388]], fatty acid &alpha;-oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388]
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* Reaction: [[DTDPKIN-RXN]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[DUDPKIN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Reaction: [[GDPKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[NUCLEOSIDE-DIP-KIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14120]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14228]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[UDPKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-7176]]
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* [[PWY-7220]]
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* [[PWY-7184]]
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* [[PWY-7222]]
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* [[PWY-7205]]
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* [[PWY-7224]]
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* [[PWY-7197]]
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* [[PWY0-166]]
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* [[PWY-7227]]
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* [[PPGPPMET-PWY]]
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* [[PWY-7226]]
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* [[PWY-7221]]
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* [[PWY-6545]]
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* [[PWY-7187]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: right end position=6446}}
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{{#set: ec number=EC-3.5.1.23}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: gene associated=Tiso_gene_14341}}
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{{#set: left end position=2856}}
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{{#set: in pathway=PWY-7119|PWY66-388}}
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{{#set: centisome position=30.183893    }}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction associated=CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 16:05, 21 March 2018

Gene Tiso_gene_9290

  • right end position:
    • 6446
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2856
  • centisome position:
    • 30.183893
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10919&oldid=32333"