Difference between revisions of "ASPARTATESYN-PWY"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14719 CPD-14719] == * smiles: ** CCCCCCCCCCCCCCCC[CH]=O * common name: ** heptadecanal * in...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
| − | ** | + | ** ORF |
| − | * | + | ** trna_intron_catalytic_cterminal_subfamily_protein |
| − | * | + | * ec number: |
| − | * | + | ** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16] |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == Reaction(s) | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | == | + | ** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c] |
| − | * [[ | + | * With common name(s): |
| − | == | + | ** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] |
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_3776]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[Tiso_gene_10338]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[Tiso_gene_5254]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | == Pathways == | ||
| + | * [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689] | ||
| + | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | * | + | * UNIPROT: |
| − | ** [http:// | + | ** [http://www.uniprot.org/uniprot/O07118 O07118] |
| − | + | {{#set: direction=LEFT-TO-RIGHT}} | |
| − | {{#set: | + | {{#set: common name=ORF}} |
| − | {{#set: common name= | + | {{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}} |
| − | {{#set: | + | {{#set: ec number=EC-4.6.1.16}} |
| − | {{#set: | + | {{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}} |
| − | {{#set: | + | {{#set: in pathway=PWY-6689|PWY-7803}} |
| − | {{#set: | + | {{#set: reconstruction category=annotation}} |
| + | {{#set: reconstruction source=annotation-in-silico_annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Revision as of 15:06, 21 March 2018
Contents
Reaction 3.1.27.9-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- trna_intron_catalytic_cterminal_subfamily_protein
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD0-2350[c] => 1 Pre-tRNA-3-prime-half-molecules[c] + 1 Pre-tRNA-5-prime-half-molecules[c] + 1 tRNA-Introns[c]
- With common name(s):
- 1 a polycistronic tRNA precursor[c] => 1 a 3'-half-tRNA molecule with a 5'-OH end[c] + 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] + 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_3776
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_10338
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5254
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-6689, tRNA splicing I: PWY-6689
- 2 reactions found over 7 reactions in the full pathway
- PWY-7803, tRNA splicing II: PWY-7803
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- UNIPROT:
