Difference between revisions of "Tiso gene 11832"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** 5_deoxy_cytosolic_type_c_protein
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** plasmalogen biosynthesis
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
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** 5_-nucleotidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.91 EC-3.1.3.91]
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''16''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[CMP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CYTIDINE]][c]
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* [[2.7.7.14-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 CMP[c] '''=>''' 1 phosphate[c] '''+''' 1 cytidine[c]
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*** [[Tiso_gene_18070]]
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** 4 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_6988]]
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*** [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[CHOLINE-KINASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 associated gene(s):
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* [[Tiso_gene_6640]]
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*** [[Tiso_gene_16805]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_13929]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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* [[ETHANOLAMINE-KINASE-RXN]]
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***EC-NUMBER
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** 0 associated gene:
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** [[pantograph]]-[[esiliculosus]]
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_14435]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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* [[RXN-17729]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Tiso_gene_5911]]
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*** [[Tiso_gene_13959]]
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** IN-SILICO_ANNOTATION
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** 2 reconstruction source(s) associated:
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14434]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[RXN-17730]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_14246]]
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*** [[Tiso_gene_5063]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_7386]]
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
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* [[RXN-17731]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_13392]]
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* Category: [[orthology]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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* [[RXN-5641]]
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* Category: [[annotation]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.42-RXN 2.3.1.42-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.15-RXN 2.7.7.15-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.8.22-RXN 2.7.8.22-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALKYLGLYCERONE-PHOSPHATE-SYNTHASE-RXN ALKYLGLYCERONE-PHOSPHATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17728 RXN-17728]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17732 RXN-17732]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17733 RXN-17733]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17734 RXN-17734]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9344 RXN-9344]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29368 29368]
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{{#set: common name=plasmalogen biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00511 R00511]
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{{#set: total reaction=16}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=44.0}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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{{#set: common name=ORF}}
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{{#set: common name=5_-nucleotidase}}
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{{#set: ec number=EC-3.1.3.91}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_6988|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_14435|Tiso_gene_5911|Tiso_gene_14434|Tiso_gene_14246}}
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{{#set: in pathway=PWY-7185}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:11, 21 March 2018

Pathway PWY-7782

  • taxonomic range:
  • common name:
    • plasmalogen biosynthesis
  • Synonym(s):

Reaction(s) found

7 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11832&oldid=32749"