Difference between revisions of "P562-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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** L-lysine biosynthesis I
 
* Synonym(s):
 
* Synonym(s):
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** L-lysine and L-diaminopimelate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
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*** [[Tiso_gene_18603]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_11980]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_6282]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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* [[ASPARTATEKIN-RXN]]
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* [[Tiso_gene_4457]]
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** 4 associated gene(s):
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_4345]]
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* [[Tiso_gene_3577]]
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*** [[Tiso_gene_17057]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_13809]]
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* [[Tiso_gene_1547]]
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*** [[Tiso_gene_16097]]
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** [[pantograph]]-[[athaliana]]
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** 7 reconstruction source(s) associated:
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* [[Tiso_gene_8263]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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*** [[orthology-synechocystis]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[manual-primary_network]]
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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*** [[orthology-creinhardtii]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[DIAMINOPIMDECARB-RXN]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_10737]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_12041]]
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*** Tool: [[pantograph]]
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** 6 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMEPIM-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[DIHYDRODIPICSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14829]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14014]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13314]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCDIAMINOPIMDESUCC-RXN SUCCDIAMINOPIMDESUCC-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCINYLDIAMINOPIMTRANS-RXN SUCCINYLDIAMINOPIMTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=TETHYDPICSUCC-RXN TETHYDPICSUCC-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
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{{#set: common name=L-lysine biosynthesis I}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-lysine and L-diaminopimelate biosynthesis}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: reaction found=6}}
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{{#set: gene associated=Tiso_gene_11980|Tiso_gene_6282|Tiso_gene_4457|Tiso_gene_3577|Tiso_gene_1547|Tiso_gene_8263}}
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{{#set: total reaction=9}}
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{{#set: in pathway=PWY-5943|PWY-7591}}
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{{#set: completion rate=67.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:12, 21 March 2018

Pathway DAPLYSINESYN-PWY

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis I
  • Synonym(s):
    • L-lysine and L-diaminopimelate biosynthesis

Reaction(s) found

6 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P562-PWY&oldid=32856"