Difference between revisions of "Tiso gene 3446"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribof...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6642 PWY-6642] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6642 PWY-6642] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** riboflavin_biosynthesis_protein
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** (R)-cysteate degradation
* ec number:
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** [http://enzyme.expasy.org/EC/4.1.99.12 EC-4.1.99.12]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''1''' reactions found over '''3''' reactions in the full pathway
** 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[FORMATE]][c]
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* [[RXN-11737]]
* With common name(s):
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** 6 associated gene(s):
** 1 D-ribulose 5-phosphate[c] '''=>''' 1 H+[c] '''+''' 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c] '''+''' 1 formate[c]
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*** [[Tiso_gene_13538]]
 
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*** [[Tiso_gene_15680]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_6815]]
Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_12889]]
* [[Tiso_gene_14275]]
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*** [[Tiso_gene_17809]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_17718]]
***EC-NUMBER
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** 5 reconstruction source(s) associated:
* [[Tiso_gene_19932]]
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*** [[annotation-experimental_annotation]]
** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-athaliana]]
== Pathways  ==
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*** [[annotation-in-silico_annotation]]
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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*** [[orthology-creinhardtii]]
** '''4''' reactions found over '''10''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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== Reaction(s) not found ==
** '''6''' reactions found over '''9''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=R230-RXN R230-RXN]
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11691 RXN-11691]
** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18457 18457]
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{{#set: common name=(R)-cysteate degradation}}
* LIGAND-RXN:
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{{#set: reaction found=1}}
** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
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{{#set: total reaction=3}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=33.0}}
{{#set: common name=riboflavin_biosynthesis_protein}}
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{{#set: ec number=EC-4.1.99.12}}
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{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932}}
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{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:13, 21 March 2018

Pathway PWY-6642

  • taxonomic range:
  • common name:
    • (R)-cysteate degradation
  • Synonym(s):

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links