Difference between revisions of "Tiso gene 10895"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] == * direction: ** LEFT-TO-RIGHT * common name: ** red_chlorophyll_catabolite_re...")
(Created page with "Category:Gene == Gene Tiso_gene_14434 == * right end position: ** 2709 * transcription direction: ** POSITIVE * left end position: ** 2228 * centisome position: ** 28.3280...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] ==
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== Gene Tiso_gene_14434 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2709
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* common name:
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* transcription direction:
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** red_chlorophyll_catabolite_reductase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.3.7.12 EC-1.3.7.12]
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** 2228
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* centisome position:
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** 28.328033   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-NUCLEOTID-RXN]]
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** 2 [[PROTON]][c] '''+''' 1 [[CPD-7063]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD-7064]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 2 H+[c] '''+''' 1 red chlorophyll catabolite[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 primary fluorescent chlorophyll catabolite[c]
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* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14025]]
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* [[Tiso_gene_17975]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-14026]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
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*** Assignment: ec-number
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* Reaction: [[RXN-14227]]
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* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN-5841]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7607]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7609]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[XMPXAN-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-5381]]
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* [[PWY-6607]]
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* [[PWY-7185]]
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* [[PWY-7821]]
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* [[SALVADEHYPOX-PWY]]
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* [[PWY-6596]]
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2709}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24755 24755]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2228}}
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** [http://www.genome.jp/dbget-bin/www_bget?R09032 R09032]
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{{#set: centisome position=28.328033    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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{{#set: common name=red_chlorophyll_catabolite_reductase}}
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|PWY-7821|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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{{#set: ec number=EC-1.3.7.12}}
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{{#set: gene associated=Tiso_gene_17975}}
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{{#set: in pathway=PWY-5098|PWY-6927}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:15, 21 March 2018

Gene Tiso_gene_14434

  • right end position:
    • 2709
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2228
  • centisome position:
    • 28.328033
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10895&oldid=33111"