Difference between revisions of "PWY-7388"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] == * direction: ** LEFT-TO-RIGHT * common name: ** geranylgeranyl_diphosphate_re...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7664 RXN-7664] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** geranylgeranyl_diphosphate_reductase
+
** L-lysine biosynthesis III
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''6''' reactions found over '''7''' reactions in the full pathway
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-7005]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CPD-7004]][c] '''+''' 1 [[NADP]][c]
+
* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 H+[c] '''+''' 1 geranylgeranyl chlorophyll a[c] '''+''' 1 NADPH[c] '''=>''' 1 dihydrogeranylgeranyl chlorophyll a[c] '''+''' 1 NADP+[c]
+
*** [[Tiso_gene_18603]]
−
 
+
** 7 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_2613]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[manual-primary_network]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-creinhardtii]]
−
== Pathways  ==
+
* [[ASPARTATEKIN-RXN]]
−
* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
+
** 4 associated gene(s):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
*** [[Tiso_gene_4345]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_17057]]
−
* Category: [[annotation]]
+
*** [[Tiso_gene_13809]]
−
** Source: [[annotation-experimental_annotation]]
+
*** [[Tiso_gene_16097]]
−
*** Tool: [[pathwaytools]]
+
** 7 reconstruction source(s) associated:
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[DIAMINOPIMDECARB-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_10737]]
 +
*** [[Tiso_gene_12041]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[DIHYDRODIPICSYN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_14829]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-14014]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_13314]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-4821]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMELATE-DEHYDROGENASE-RXN DIAMINOPIMELATE-DEHYDROGENASE-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: common name=geranylgeranyl_diphosphate_reductase}}
+
{{#set: common name=L-lysine biosynthesis III}}
−
{{#set: gene associated=Tiso_gene_2613}}
+
{{#set: reaction found=6}}
−
{{#set: in pathway=PWY-5064}}
+
{{#set: total reaction=7}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: completion rate=86.0}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 15:15, 21 March 2018

Pathway PWY-2942

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis III
  • Synonym(s):

Reaction(s) found

6 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7388&oldid=33122"