Difference between revisions of "RXN-7664"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTERIDINEPYROPHOSPHOKIN-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2PTERIDINEPYROPHOSPHOKIN-RXN H2PTERIDINEPYROPHOSPHOKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** folic_acid_synthesis_protein
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** octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.6.3 EC-2.7.6.3]
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* Synonym(s):
 
* Synonym(s):
 +
** octanoyl-ACP biosynthesis (mitochondria, yeast)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''9''' reactions in the full pathway
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** 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DIHYDROPTERIN-CH2OH-PP]][c] '''+''' 1 [[PROTON]][c]
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 6-(hydroxymethyl)-7,8-dihydropterin[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 (7,8-dihydropterin-6-yl)methyl diphosphate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_5939]]
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*** [[Tiso_gene_500]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_14485]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13394]]
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* [[Tiso_gene_11659]]
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*** [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_15991]]
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***EC-NUMBER
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*** [[Tiso_gene_135]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_19302]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_10876]]
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== Pathways  ==
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** 6 reconstruction source(s) associated:
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
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*** [[annotation-experimental_annotation]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
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*** [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
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*** [[orthology-synechocystis]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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* [[4.2.1.58-RXN]]
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* Category: [[orthology]]
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** 6 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_13394]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_6884]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_136]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_10876]]
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* Category: [[annotation]]
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*** [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_135]]
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*** Tool: [[pathwaytools]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_3800]]
 +
*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_7965]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
 +
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
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** 7 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_136]]
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*** [[Tiso_gene_19309]]
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*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_18460]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
 +
* [[RXN-14972]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-14973]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[RXN-9514]]
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** 10 associated gene(s):
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*** [[Tiso_gene_13394]]
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*** [[Tiso_gene_16579]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_13083]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_10415]]
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*** [[Tiso_gene_624]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9515]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9516]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_19302]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11412 11412]
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: common name=octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03503 R03503]
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{{#set: common name=octanoyl-ACP biosynthesis (mitochondria, yeast)}}
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* UNIPROT:
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{{#set: reaction found=9}}
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** [http://www.uniprot.org/uniprot/P22291 P22291]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/P26281 P26281]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/O84619 O84619]
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** [http://www.uniprot.org/uniprot/Q9ZM35 Q9ZM35]
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** [http://www.uniprot.org/uniprot/Q9RXY4 Q9RXY4]
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** [http://www.uniprot.org/uniprot/O66550 O66550]
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** [http://www.uniprot.org/uniprot/O25680 O25680]
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** [http://www.uniprot.org/uniprot/Q9PJ54 Q9PJ54]
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** [http://www.uniprot.org/uniprot/Q9JV81 Q9JV81]
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** [http://www.uniprot.org/uniprot/P64143 P64143]
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** [http://www.uniprot.org/uniprot/Q9Z7E8 Q9Z7E8]
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** [http://www.uniprot.org/uniprot/P82602 P82602]
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** [http://www.uniprot.org/uniprot/P29252 P29252]
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** [http://www.uniprot.org/uniprot/P72736 P72736]
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** [http://www.uniprot.org/uniprot/O04862 O04862]
+
−
** [http://www.uniprot.org/uniprot/Q9SZV3 Q9SZV3]
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−
** [http://www.uniprot.org/uniprot/Q9X8I1 Q9X8I1]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=folic_acid_synthesis_protein}}
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−
{{#set: ec number=EC-2.7.6.3}}
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−
{{#set: gene associated=Tiso_gene_11659}}
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−
{{#set: in pathway=PWY-7539|PWY-6797|PWY-6147}}
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−
{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:15, 21 March 2018

Pathway PWY-7388

  • taxonomic range:
  • common name:
    • octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
  • Synonym(s):
    • octanoyl-ACP biosynthesis (mitochondria, yeast)

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

"octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)" cannot be used as a page name in this wiki.



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