Difference between revisions of "RXN-13001"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLMETHIONINE-DEFORMYLASE-RXN FORMYLMETHIONINE-DEFORMYLASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLMETHIONINE-DEFORMYLASE-RXN FORMYLMETHIONINE-DEFORMYLASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** polypeptide_deformylase
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** L-ascorbate biosynthesis I (L-galactose pathway)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.31 EC-3.5.1.31]
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* Synonym(s):
 
* Synonym(s):
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** vitamin C biosynthesis
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** ascorbic acid biosynthesis
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** L-ascorbic acid biosynthesis I
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** Smirnoff-Wheeler pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''8''' reactions in the full pathway
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** 1 [[N-FORMYLMETHIONINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[MET]][c]
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* [[2.7.7.13-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 N-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 formate[c] '''+''' 1 L-methionine[c]
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*** [[Tiso_gene_14704]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GALACTONOLACTONE-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_14998]]
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** 1 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_210]]
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***AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[annotation]]
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* [[PHOSMANMUT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_5802]]
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*** [[Tiso_gene_13477]]
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*** [[Tiso_gene_14704]]
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*** [[Tiso_gene_4816]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-creinhardtii]]
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* [[RXN-1882]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6621]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1884]]
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** 5 associated gene(s):
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*** [[Tiso_gene_14920]]
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*** [[Tiso_gene_14624]]
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*** [[Tiso_gene_18748]]
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*** [[Tiso_gene_703]]
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*** [[Tiso_gene_4219]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXNQT-4142]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11614]]
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*** [[Tiso_gene_10754]]
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*** [[Tiso_gene_15599]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4141 RXNQT-4141]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17781 17781]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-882 PWY-882]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00653 R00653]
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{{#set: common name=L-ascorbate biosynthesis I (L-galactose pathway)}}
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* UNIPROT:
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{{#set: common name=vitamin C biosynthesis|ascorbic acid biosynthesis|L-ascorbic acid biosynthesis I|Smirnoff-Wheeler pathway}}
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** [http://www.uniprot.org/uniprot/P63916 P63916]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/Q9PIT8 Q9PIT8]
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{{#set: total reaction=8}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=75.0}}
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{{#set: common name=polypeptide_deformylase}}
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{{#set: ec number=EC-3.5.1.31}}
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{{#set: gene associated=Tiso_gene_14998}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 16:17, 21 March 2018

Pathway PWY-882

  • taxonomic range:
  • common name:
    • L-ascorbate biosynthesis I (L-galactose pathway)
  • Synonym(s):
    • vitamin C biosynthesis
    • ascorbic acid biosynthesis
    • L-ascorbic acid biosynthesis I
    • Smirnoff-Wheeler pathway

Reaction(s) found

6 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13001&oldid=33325"