Difference between revisions of "Tiso gene 15171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMARYLACETOACETASE-RXN FUMARYLACETOACETASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE] == * smiles: *...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMARYLACETOACETASE-RXN FUMARYLACETOACETASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)C(C([O-])=O)C(C([O-])=O)O
 
* common name:
 
* common name:
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** fumarylacetoacetate_hydrolase
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** (2R,3S)-3-isopropylmalate
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** protein_fah-1
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* inchi key:
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* ec number:
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** InChIKey=RNQHMTFBUSSBJQ-CRCLSJGQSA-L
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** [http://enzyme.expasy.org/EC/3.7.1.2 EC-3.7.1.2]
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* molecular weight:
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** 174.153   
 
* Synonym(s):
 
* Synonym(s):
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** 2-D-threo-hydroxy-3-carboxy-isocaproate
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** 3-carboxy-2-hydroxy-4-methylpentanoate
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** β-isopropylmalate
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** 3-isopropylmalate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-13158]]
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** 1 [[4-FUMARYL-ACETOACETATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[FUM]][c]
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* [[IMDH]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 4-fumaryl-acetoacetate[c] '''+''' 1 H2O[c] '''=>''' 1 acetoacetate[c] '''+''' 1 H+[c] '''+''' 1 fumarate[c]
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== Reaction(s) of unknown directionality ==
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* [[RXN-8991]]
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== Genes associated with this reaction  ==
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* [[RXN-13163]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[3-ISOPROPYLMALDEHYDROG-RXN]]
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* [[Tiso_gene_2213]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5675]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10244 10244]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6857402 6857402]
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* LIGAND-RXN:
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* HMDB : HMDB12156
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** [http://www.genome.jp/dbget-bin/www_bget?R01364 R01364]
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* LIGAND-CPD:
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* UNIPROT:
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** [http://www.genome.jp/dbget-bin/www_bget?C04411 C04411]
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** [http://www.uniprot.org/uniprot/P16930 P16930]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P35505 P35505]
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** [http://www.chemspider.com/Chemical-Structure.5256741.html 5256741]
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** [http://www.uniprot.org/uniprot/P25093 P25093]
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* CHEBI:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=35121 35121]
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{{#set: common name=fumarylacetoacetate_hydrolase}}
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* BIGG : 3c2hmp
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{{#set: common name=protein_fah-1}}
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{{#set: smiles=CC(C)C(C([O-])=O)C(C([O-])=O)O}}
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{{#set: ec number=EC-3.7.1.2}}
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{{#set: common name=(2R,3S)-3-isopropylmalate}}
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{{#set: gene associated=Tiso_gene_2213|Tiso_gene_5675}}
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{{#set: inchi key=InChIKey=RNQHMTFBUSSBJQ-CRCLSJGQSA-L}}
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{{#set: in pathway=TYRFUMCAT-PWY}}
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{{#set: molecular weight=174.153    }}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: common name=2-D-threo-hydroxy-3-carboxy-isocaproate|3-carboxy-2-hydroxy-4-methylpentanoate|β-isopropylmalate|3-isopropylmalate}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: consumed by=RXN-13158|IMDH}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reversible reaction associated=RXN-8991|RXN-13163|3-ISOPROPYLMALDEHYDROG-RXN}}

Revision as of 15:18, 21 March 2018

Metabolite 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE

  • smiles:
    • CC(C)C(C([O-])=O)C(C([O-])=O)O
  • common name:
    • (2R,3S)-3-isopropylmalate
  • inchi key:
    • InChIKey=RNQHMTFBUSSBJQ-CRCLSJGQSA-L
  • molecular weight:
    • 174.153
  • Synonym(s):
    • 2-D-threo-hydroxy-3-carboxy-isocaproate
    • 3-carboxy-2-hydroxy-4-methylpentanoate
    • β-isopropylmalate
    • 3-isopropylmalate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(C)C(C([O-])=O)C(C([O-])=O)O" cannot be used as a page name in this wiki.




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