Difference between revisions of "Chondroitin-N-acetyl-galactosamines"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.271-RXN 1.1.1.271-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-L-fucose syntha...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.271-RXN 1.1.1.271-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-ornithine biosynthesis II
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** GDP-L-fucose synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.271 EC-1.1.1.271]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[GLUTKIN-RXN]]
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** 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-13118]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_12021]]
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** 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 GDP-β-L-fucose[c]
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*** [[Tiso_gene_16634]]
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*** [[Tiso_gene_17057]]
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== Genes associated with this reaction  ==
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** 7 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_16970]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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* [[GLUTSEMIALDEHYDROG-RXN]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** 2 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_16634]]
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* Category: [[orthology]]
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*** [[Tiso_gene_16258]]
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** Source: [[orthology-athaliana]]
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** 6 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** [[orthology-athaliana]]
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* Category: [[annotation]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11231]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-NADP+-RXN GLUTAMATE-DEHYDROGENASE-NADP+-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33208}}
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* RHEA:
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{{#set: common name=L-ornithine biosynthesis II}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18885 18885]
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{{#set: reaction found=3}}
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* LIGAND-RXN:
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{{#set: total reaction=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05692 R05692]
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{{#set: completion rate=75.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GDP-L-fucose synthase}}
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{{#set: ec number=EC-1.1.1.271}}
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{{#set: gene associated=Tiso_gene_16970}}
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{{#set: in pathway=PWY-66}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:18, 21 March 2018

Reaction 1.1.1.271-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-L-fucose synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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