Difference between revisions of "PWY-4921"

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(Created page with "Category:Gene == Gene Tiso_gene_974 == * left end position: ** 2012 * transcription direction: ** POSITIVE * right end position: ** 4615 * centisome position: ** 7.440003...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_974 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] ==
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* left end position:
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* direction:
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** 2012
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
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* right end position:
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** 4615
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* centisome position:
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** 7.440003   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GTPOP]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[CPD-13357]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c]
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* [[PEPDEPHOS-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] '''=>''' 1 H2O[c] '''+''' 1 3-methyl-2-oxobutanoate[c]
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***ec-number
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** experimental_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_1563]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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** [[pantograph]]-[[creinhardtii]]
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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** [[pantograph]]-[[creinhardtii]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
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* [[RXN-14117]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** in-silico_annotation
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== Reconstruction information  ==
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***ec-number
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* Category: [[orthology]]
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** experimental_annotation
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** Source: [[orthology-athaliana]]
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***ec-number
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*** Tool: [[pantograph]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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*** Tool: [[pantograph]]
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* [[RXN-14192]]
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* Category: [[manual]]
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** in-silico_annotation
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** Source: [[manual-primary_network]]
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***ec-number
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* Category: [[annotation]]
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** experimental_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[RXN-14207]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways associated ==
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY-2221]]
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* [[GLYCOLYSIS]]
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* [[NPGLUCAT-PWY]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-7218]]
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* [[PWY-6901]]
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* [[PWY-7383]]
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* [[P124-PWY]]
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* [[PWY-6886]]
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* [[PWY-5723]]
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* [[FERMENTATION-PWY]]
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* [[PWY-6142]]
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* [[P122-PWY]]
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* [[PWY-5484]]
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* [[PWY-7003]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=2012}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
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{{#set: right end position=4615}}
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* UNIPROT:
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{{#set: centisome position=7.440003    }}
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** [http://www.uniprot.org/uniprot/P55186 P55186]
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{{#set: reaction associated=GTPOP|PEPDEPHOS-RXN|RXN-14117|RXN-14192|RXN-14207}}
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** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|NPGLUCAT-PWY|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6901|PWY-7383|P124-PWY|PWY-6886|PWY-5723|FERMENTATION-PWY|PWY-6142|P122-PWY|PWY-5484|PWY-7003}}
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** [http://www.uniprot.org/uniprot/P05791 P05791]
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** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
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** [http://www.uniprot.org/uniprot/P44851 P44851]
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
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** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
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** [http://www.uniprot.org/uniprot/P39522 P39522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.2.1.9}}
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{{#set: gene associated=Tiso_gene_1563}}
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{{#set: in pathway=VALSYN-PWY|PWY-7111}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:18, 21 March 2018

Reaction DIHYDROXYISOVALDEHYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] => 1 H2O[c] + 1 3-methyl-2-oxobutanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • VALSYN-PWY, L-valine biosynthesis: VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111, pyruvate fermentation to isobutanol (engineered): PWY-7111
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-4921&oldid=33446"