Difference between revisions of "PWY-6973"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGHYD-RXN ASPARAGHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** asparaginase * ec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17795 RXN-17795] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** 3-ketoacyl-_thi...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGHYD-RXN ASPARAGHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17795 RXN-17795] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** asparaginase
+
** thiolase
 +
** 3-ketoacyl-_thiolase
 +
** acetyl-_c-acetyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
−
** [http://enzyme.expasy.org/EC/3.5.1.1 EC-3.5.1.1]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[ASN]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c]
+
** 1 [[CPD-19157]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-19148]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 L-asparagine[c] '''=>''' 1 ammonium[c] '''+''' 1 L-aspartate[c]
+
** 1 3-oxo-(7Z)-tetradecenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 (5Z)-dodecenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19398]]
+
* Gene: [[Tiso_gene_3855]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17477]]
+
* Gene: [[Tiso_gene_15327]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_3570]]
+
* Gene: [[Tiso_gene_17451]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10116]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3856]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[ASPARAGINE-DEG1-PWY]], L-asparagine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY ASPARAGINE-DEG1-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[ASPASN-PWY]], superpathway of L-aspartate and L-asparagine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPASN-PWY ASPASN-PWY]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21016 21016]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00485 R00485]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06608 P06608]
 
−
** [http://www.uniprot.org/uniprot/P26900 P26900]
 
−
** [http://www.uniprot.org/uniprot/P43843 P43843]
 
−
** [http://www.uniprot.org/uniprot/Q9V262 Q9V262]
 
−
** [http://www.uniprot.org/uniprot/Q9JT73 Q9JT73]
 
−
** [http://www.uniprot.org/uniprot/O25424 O25424]
 
−
** [http://www.uniprot.org/uniprot/P37595 P37595]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLB9 Q9ZLB9]
 
−
** [http://www.uniprot.org/uniprot/O34482 O34482]
 
−
** [http://www.uniprot.org/uniprot/Q9V2K1 Q9V2K1]
 
−
** [http://www.uniprot.org/uniprot/O57797 O57797]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ82 Q9PJ82]
 
−
** [http://www.uniprot.org/uniprot/P30363 P30363]
 
−
** [http://www.uniprot.org/uniprot/P30362 P30362]
 
−
** [http://www.uniprot.org/uniprot/P30364 P30364]
 
−
** [http://www.uniprot.org/uniprot/P38986 P38986]
 
−
** [http://www.uniprot.org/uniprot/P50287 P50287]
 
−
** [http://www.uniprot.org/uniprot/P11163 P11163]
 
−
** [http://www.uniprot.org/uniprot/P50286 P50286]
 
−
** [http://www.uniprot.org/uniprot/P87015 P87015]
 
−
** [http://www.uniprot.org/uniprot/Q9UTS7 Q9UTS7]
 
−
** [http://www.uniprot.org/uniprot/P00805 P00805]
 
−
** [http://www.uniprot.org/uniprot/P0A962 P0A962]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=asparaginase}}
+
{{#set: common name=thiolase}}
−
{{#set: ec number=EC-3.5.1.38}}
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
{{#set: ec number=EC-3.5.1.1}}
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
{{#set: gene associated=Tiso_gene_19398|Tiso_gene_17477|Tiso_gene_3570}}
+
{{#set: ec number=EC-2.3.1.16}}
−
{{#set: in pathway=ASPARAGINE-DEG1-PWY|ASPASN-PWY|ASPARAGINE-DEG1-PWY-1}}
+
{{#set: gene associated=Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_17451|Tiso_gene_10116|Tiso_gene_3856}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:19, 21 March 2018

Reaction RXN-17795

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thiolase
    • 3-ketoacyl-_thiolase
    • acetyl-_c-acetyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-oxo-(7Z)-tetradecenoyl-CoA[c] + 1 coenzyme A[c] => 1 acetyl-CoA[c] + 1 (5Z)-dodecenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6973&oldid=33509"