Difference between revisions of "Tiso gene 11606"

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(Created page with "Category:Gene == Gene Tiso_gene_91 == * left end position: ** 18607 * transcription direction: ** POSITIVE * right end position: ** 19771 * centisome position: ** 41.15773...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_91 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] ==
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* left end position:
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* taxonomic range:
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** 18607
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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* transcription direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4479 TAX-4479]
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** POSITIVE
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* common name:
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* right end position:
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** C4 photosynthetic carbon assimilation cycle, PEPCK type
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** 19771
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* centisome position:
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** 41.157734   
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* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, PEPCK type
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
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'''7''' reactions found over '''10''' reactions in the full pathway
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** in-silico_annotation
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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***automated-name-match
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** 2 associated gene(s):
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* [[6PGLUCONDEHYDROG-RXN]]
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*** [[Tiso_gene_5959]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_10957]]
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* [[GLYCLTD]]
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[creinhardtii]]
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*** [[annotation-experimental_annotation]]
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* [[GLYCOLATE-REDUCTASE-RXN]]
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*** [[orthology-athaliana]]
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** experimental_annotation
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*** [[annotation-in-silico_annotation]]
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***automated-name-match
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*** [[manual-primary_network]]
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* [[GLYOXYLATE-REDUCTASE-NADP+-RXN]]
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*** [[orthology-esiliculosus]]
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** in-silico_annotation
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* [[ASPAMINOTRANS-RXN]]
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***ec-number
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** 6 associated gene(s):
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** experimental_annotation
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*** [[Tiso_gene_17718]]
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***ec-number
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*** [[Tiso_gene_6815]]
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* [[RXN-6903]]
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*** [[Tiso_gene_13538]]
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** in-silico_annotation
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*** [[Tiso_gene_15680]]
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***automated-name-match
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*** [[Tiso_gene_17809]]
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* [[RXN-9952]]
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*** [[Tiso_gene_12889]]
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** [[pantograph]]-[[esiliculosus]]
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** 7 reconstruction source(s) associated:
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* [[RXN0-5289]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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*** [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** [[orthology-athaliana]]
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***automated-name-match
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*** [[orthology-synechocystis]]
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== Pathways associated ==
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*** [[manual-primary_network]]
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* [[PWY-4321]]
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*** [[orthology-creinhardtii]]
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* [[GLUDEG-I-PWY]]
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* [[MALIC-NADP-RXN]]
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* [[OXIDATIVEPENT-PWY]]
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** 3 associated gene(s):
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* [[PWY-7295]]
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*** [[Tiso_gene_12200]]
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* [[PWY-7294]]
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*** [[Tiso_gene_6675]]
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* [[PWY-5022]]
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*** [[Tiso_gene_12896]]
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* [[PWY-6473]]
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** 3 reconstruction source(s) associated:
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* [[PWY-6535]]
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*** [[orthology-athaliana]]
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* [[PWY-5677]]
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*** [[orthology-synechocystis]]
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* [[GLYCOLATEMET-PWY]]
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*** [[orthology-esiliculosus]]
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* [[P122-PWY]]
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* [[PEPCARBOXYKIN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19475]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[RXN-13697]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_13538]]
 +
*** [[Tiso_gene_12889]]
 +
*** [[Tiso_gene_6815]]
 +
*** [[Tiso_gene_17718]]
 +
*** [[Tiso_gene_17809]]
 +
*** [[Tiso_gene_15680]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
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* [[RXN-13698]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_10957]]
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*** [[Tiso_gene_5959]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_7660]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-NADP+-RXN MALATE-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=18607}}
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{{#set: taxonomic range=TAX-3398}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: taxonomic range=TAX-4479}}
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{{#set: right end position=19771}}
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, PEPCK type}}
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{{#set: centisome position=41.157734    }}
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{{#set: common name=C4 photosynthesis, PEPCK type}}
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{{#set: reaction associated=4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN|6PGLUCONDEHYDROG-RXN|GLYCLTD|GLYCOLATE-REDUCTASE-RXN|GLYOXYLATE-REDUCTASE-NADP+-RXN|RXN-6903|RXN-9952|RXN0-5289|SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN}}
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{{#set: reaction found=7}}
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{{#set: pathway associated=PWY-4321|GLUDEG-I-PWY|OXIDATIVEPENT-PWY|PWY-7295|PWY-7294|PWY-5022|PWY-6473|PWY-6535|PWY-5677|GLYCOLATEMET-PWY|P122-PWY}}
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{{#set: total reaction=10}}
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{{#set: completion rate=70.0}}

Revision as of 16:20, 21 March 2018

Pathway PWY-7117

  • taxonomic range:
  • common name:
    • C4 photosynthetic carbon assimilation cycle, PEPCK type
  • Synonym(s):
    • C4 photosynthesis, PEPCK type

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11606&oldid=33617"