Difference between revisions of "CPD-19161"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_monophospha...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12610 RXN-12610] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** heterolactic fermentation
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** ORF
 +
** thiamine_monophosphate_synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** lactate heterofermentation
 
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** glucose fermentation to lactate
 
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** phosphoketolase pathway
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''14''' reactions found over '''18''' reactions in the full pathway
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* With identifiers:
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* [[2PGADEHYDRAT-RXN]]
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** 2 [[PROTON]][c] '''+''' 1 [[CPD-13576]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''=>''' 1 [[THIAMINE-P]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14718]]
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** 2 H+[c] '''+''' 1 2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''=>''' 1 thiamine phosphate[c] '''+''' 1 diphosphate[c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_8720]]
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−
*** [[Tiso_gene_5619]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13317]]
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Genes have been associated with this reaction based on different elements listed below.
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** 7 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_2159]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_10320]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_2160]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[6PGLUCONDEHYDROG-RXN]]
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*** Assignment: EC-NUMBER
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** 3 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_91]]
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* [[PWY-6907]], thiamine diphosphate biosynthesis III (Staphylococcus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6907 PWY-6907]
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*** [[Tiso_gene_20238]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_7157]]
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* [[PWY-6893]], thiamine diphosphate biosynthesis II (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6893 PWY-6893]
−
** 4 reconstruction source(s) associated:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* Category: [[annotation]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[6PGLUCONOLACT-RXN]]
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−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_8585]]
+
−
*** [[Tiso_gene_10799]]
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−
*** [[Tiso_gene_20412]]
+
−
*** [[Tiso_gene_15950]]
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−
*** [[Tiso_gene_5901]]
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−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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−
* [[ACETALD-DEHYDROG-RXN]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_7649]]
+
−
*** [[Tiso_gene_2052]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[ALCOHOL-DEHYDROG-RXN]]
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−
** 6 associated gene(s):
+
−
*** [[Tiso_gene_7649]]
+
−
*** [[Tiso_gene_18459]]
+
−
*** [[Tiso_gene_6562]]
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−
*** [[Tiso_gene_6563]]
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−
*** [[Tiso_gene_5424]]
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−
*** [[Tiso_gene_5425]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
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−
*** [[orthology-synechocystis]]
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−
* [[FRUCTOKINASE-RXN]]
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−
** 3 associated gene(s):
+
−
*** [[Tiso_gene_17974]]
+
−
*** [[Tiso_gene_3107]]
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−
*** [[Tiso_gene_1303]]
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−
** 4 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[orthology-creinhardtii]]
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−
*** [[annotation-in-silico_annotation]]
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* [[GAPOXNPHOSPHN-RXN]]
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−
** 5 associated gene(s):
+
−
*** [[Tiso_gene_20000]]
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−
*** [[Tiso_gene_6766]]
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−
*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
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** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
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*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLU6PDEHYDROG-RXN]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_16918]]
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−
*** [[Tiso_gene_14877]]
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−
** 4 reconstruction source(s) associated:
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[GLUCOKIN-RXN]]
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−
** 2 associated gene(s):
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*** [[Tiso_gene_3107]]
+
−
*** [[Tiso_gene_1303]]
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−
** 4 reconstruction source(s) associated:
+
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*** [[annotation-experimental_annotation]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_14504]]
+
−
*** [[Tiso_gene_18206]]
+
−
*** [[Tiso_gene_974]]
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−
*** [[Tiso_gene_14505]]
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−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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−
*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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−
* [[PGLUCISOM-RXN]]
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−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_19480]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
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−
* [[PHOSGLYPHOS-RXN]]
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−
** 6 associated gene(s):
+
−
*** [[Tiso_gene_3527]]
+
−
*** [[Tiso_gene_18263]]
+
−
*** [[Tiso_gene_12104]]
+
−
*** [[Tiso_gene_3526]]
+
−
*** [[Tiso_gene_14642]]
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−
*** [[Tiso_gene_18264]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[RIBULP3EPIM-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Tiso_gene_4754]]
+
−
*** [[Tiso_gene_19140]]
+
−
*** [[Tiso_gene_10879]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[RXN-15513]]
+
−
** 8 associated gene(s):
+
−
*** [[Tiso_gene_7201]]
+
−
*** [[Tiso_gene_9922]]
+
−
*** [[Tiso_gene_2841]]
+
−
*** [[Tiso_gene_14530]]
+
−
*** [[Tiso_gene_9923]]
+
−
*** [[Tiso_gene_16271]]
+
−
*** [[Tiso_gene_2365]]
+
−
*** [[Tiso_gene_14664]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-1239}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=heterolactic fermentation}}
+
{{#set: common name=ORF}}
−
{{#set: common name=lactate heterofermentation|glucose fermentation to lactate|phosphoketolase pathway}}
+
{{#set: common name=thiamine_monophosphate_synthase}}
−
{{#set: reaction found=14}}
+
{{#set: ec number=EC-2.5.1.3}}
−
{{#set: total reaction=18}}
+
{{#set: gene associated=Tiso_gene_2159|Tiso_gene_10320|Tiso_gene_2160}}
−
{{#set: completion rate=78.0}}
+
{{#set: in pathway=PWY-6907|PWY-6893}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:20, 21 March 2018

Reaction RXN-12610

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • thiamine_monophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6907, thiamine diphosphate biosynthesis III (Staphylococcus): PWY-6907
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6893, thiamine diphosphate biosynthesis II (Bacillus): PWY-6893
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-19161&oldid=33668"