Difference between revisions of "PWY-7817"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oligosaccharyl_tran...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TA...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** oligosaccharyl_transferase
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** glycolysis I (from glucose 6-phosphate)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.99.18 EC-2.4.99.18]
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* Synonym(s):
 
* Synonym(s):
 +
** Embden-Meyerhof pathway
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** Embden-Meyerhof-Parnas pathway
 +
** EMP pathway
 +
** glycolysis (plastidic)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''12''' reactions found over '''12''' reactions in the full pathway
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** 1 [[CPD-18076]][c] '''+''' 1 [[Protein-L-Asparagine]][c] '''=>''' 1 [[CPD-224]][c] '''+''' 1 [[CPD-18077]][c] '''+''' 1 [[PROTON]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a [protein]-L-asparagine[c] '''=>''' 1 a dolichyl diphosphate[c] '''+''' 1 a [protein]-L-asparagine-[(glucosyl)3(mannosyl)9(N-acetylglucosaminyl)2][c] '''+''' 1 H+[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_26]]
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** 7 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_10448]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***AUTOMATED-NAME-MATCH
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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== Pathways  ==
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* [[3PGAREARR-RXN]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** 16 associated gene(s):
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** '''19''' reactions found over '''19''' reactions in the full pathway
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*** [[Tiso_gene_15048]]
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== Reconstruction information  ==
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*** [[Tiso_gene_7201]]
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* Category: [[orthology]]
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*** [[Tiso_gene_9922]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2841]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_14530]]
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* Category: [[annotation]]
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*** [[Tiso_gene_16754]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_2365]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_16271]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_5468]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[6PFRUCTPHOS-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_5733]]
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*** [[Tiso_gene_596]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_9435]]
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*** [[Tiso_gene_16502]]
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*** [[Tiso_gene_4905]]
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*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_235]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPSYNTH-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-15513]]
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** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_9923]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_19961]]
 +
*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
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* ECOCYC:
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** [http://www.uniprot.org/uniprot/P39656 P39656]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** [http://www.uniprot.org/uniprot/P48440 P48440]
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* ARACYC:
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** [http://www.uniprot.org/uniprot/P41543 P41543]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** [http://www.uniprot.org/uniprot/P80896 P80896]
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.uniprot.org/uniprot/P80897 P80897]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P48439 P48439]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P46964 P46964]
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{{#set: common name=glycolysis I (from glucose 6-phosphate)}}
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** [http://www.uniprot.org/uniprot/Q92316 Q92316]
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{{#set: common name=Embden-Meyerhof pathway|Embden-Meyerhof-Parnas pathway|EMP pathway|glycolysis (plastidic)}}
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** [http://www.uniprot.org/uniprot/Q10176 Q10176]
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{{#set: reaction found=12}}
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=12}}
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{{#set: common name=oligosaccharyl_transferase}}
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{{#set: completion rate=100.0}}
−
{{#set: ec number=EC-2.4.99.18}}
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−
{{#set: gene associated=Tiso_gene_26|Tiso_gene_10448}}
+
−
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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−
{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:22, 21 March 2018

Pathway GLYCOLYSIS

  • taxonomic range:
  • common name:
    • glycolysis I (from glucose 6-phosphate)
  • Synonym(s):
    • Embden-Meyerhof pathway
    • Embden-Meyerhof-Parnas pathway
    • EMP pathway
    • glycolysis (plastidic)

Reaction(s) found

12 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7817&oldid=33787"