Difference between revisions of "Alcohols"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBLE * ec num...")
(Created page with "Category:Gene == Gene Tiso_gene_6299 == * right end position: ** 3976 * transcription direction: ** POSITIVE * left end position: ** 1959 * centisome position: ** 15.87134...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] ==
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== Gene Tiso_gene_6299 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 3976
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.6.1.57 EC-2.6.1.57]
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** POSITIVE
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** [http://enzyme.expasy.org/EC/2.6.1.5 EC-2.6.1.5]
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* left end position:
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** 1959
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* centisome position:
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** 15.871345   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.55-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TYR]][c] '''<=>''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''+''' 1 [[GLT]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 2-oxoglutarate[c] '''+''' 1 L-tyrosine[c] '''<=>''' 1 4-hydroxyphenylpyruvate[c] '''+''' 1 L-glutamate[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17718]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_10680]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_6815]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5886 PWY-5886]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-5151]], L-tyrosine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5151 PWY-5151]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7518]], atromentin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7518 PWY-7518]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7514 PWY-7514]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5048]], rosmarinic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3976}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15093 15093]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1959}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
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{{#set: centisome position=15.871345    }}
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* UNIPROT:
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{{#set: reaction associated=3.2.1.55-RXN}}
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** [http://www.uniprot.org/uniprot/P74861 P74861]
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** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
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** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
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** [http://www.uniprot.org/uniprot/P95468 P95468]
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** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
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** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
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** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
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** [http://www.uniprot.org/uniprot/O58489 O58489]
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** [http://www.uniprot.org/uniprot/O59096 O59096]
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** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
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** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
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** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
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** [http://www.uniprot.org/uniprot/Q02636 Q02636]
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** [http://www.uniprot.org/uniprot/O84642 O84642]
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** [http://www.uniprot.org/uniprot/P17735 P17735]
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** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
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** [http://www.uniprot.org/uniprot/P04693 P04693]
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** [http://www.uniprot.org/uniprot/P04694 P04694]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.6.1.57}}
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{{#set: ec number=EC-2.6.1.5}}
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{{#set: gene associated=Tiso_gene_17718|Tiso_gene_10680|Tiso_gene_6815}}
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{{#set: in pathway=PWY-3581|TYRFUMCAT-PWY|PWY-5886|PWY-5151|PWY-7518|TYRSYN|PWY3O-4108|PWY-7514|PWY-5754|PWY-5048}}
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{{#set: reconstruction category=orthology|manual}}
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{{#set: reconstruction source=manual-primary_network|orthology-creinhardtii|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 16:25, 21 March 2018

Gene Tiso_gene_6299

  • right end position:
    • 3976
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1959
  • centisome position:
    • 15.871345
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Alcohols&oldid=34042"