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| Line 1: |
Line 1: |
| − | [[Category:Pathway]] | + | [[Category:Gene]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == | + | == Gene Tiso_gene_4806 == |
| − | * taxonomic range: | + | * right end position: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174] | + | ** 11452 |
| − | * common name: | + | * transcription direction: |
| − | ** Bifidobacterium shunt | + | ** POSITIVE |
| | + | * left end position: |
| | + | ** 10343 |
| | + | * centisome position: |
| | + | ** 39.59498 |
| | * Synonym(s): | | * Synonym(s): |
| − | ** Bifidum fermentation
| |
| − | ** Bifidum pathway
| |
| − | ** fructose-6-phosphate pathway
| |
| − | ** Bifidum shunt
| |
| − | ** glucose fermentation to lactate (Bifidobacteria)
| |
| | | | |
| − | == Reaction(s) found == | + | == Reactions associated == |
| − | '''11''' reactions found over '''15''' reactions in the full pathway
| + | * Reaction: [[RXN-5061]] |
| − | * [[1TRANSKETO-RXN]] | + | ** Source: [[annotation-experimental_annotation]] |
| − | ** 2 associated gene(s):
| + | *** Assignment: ec-number |
| − | *** [[Tiso_gene_5008]]
| + | == Pathways associated == |
| − | *** [[Tiso_gene_11559]]
| + | * [[PWY-2201]] |
| − | ** 5 reconstruction source(s) associated:
| + | * [[CODH-PWY]] |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[2PGADEHYDRAT-RXN]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_14718]]
| + | |
| − | *** [[Tiso_gene_8720]]
| + | |
| − | *** [[Tiso_gene_5619]]
| + | |
| − | *** [[Tiso_gene_13317]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]] | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[3PGAREARR-RXN]]
| + | |
| − | ** 16 associated gene(s):
| + | |
| − | *** [[Tiso_gene_2667]]
| + | |
| − | *** [[Tiso_gene_9922]]
| + | |
| − | *** [[Tiso_gene_15048]]
| + | |
| − | *** [[Tiso_gene_2841]]
| + | |
| − | *** [[Tiso_gene_14530]]
| + | |
| − | *** [[Tiso_gene_16754]]
| + | |
| − | *** [[Tiso_gene_2365]]
| + | |
| − | *** [[Tiso_gene_16271]]
| + | |
| − | *** [[Tiso_gene_5468]]
| + | |
| − | *** [[Tiso_gene_20311]]
| + | |
| − | *** [[Tiso_gene_14664]]
| + | |
| − | *** [[Tiso_gene_15391]]
| + | |
| − | *** [[Tiso_gene_14212]]
| + | |
| − | *** [[Tiso_gene_10516]]
| + | |
| − | *** [[Tiso_gene_9923]]
| + | |
| − | *** [[Tiso_gene_7201]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]] | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[GAPOXNPHOSPHN-RXN]]
| + | |
| − | ** 5 associated gene(s):
| + | |
| − | *** [[Tiso_gene_20000]]
| + | |
| − | *** [[Tiso_gene_6766]]
| + | |
| − | *** [[Tiso_gene_10646]]
| + | |
| − | *** [[Tiso_gene_3344]]
| + | |
| − | *** [[Tiso_gene_235]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[GLUCOKIN-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_3107]]
| + | |
| − | *** [[Tiso_gene_1303]]
| + | |
| − | ** 4 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[PEPDEPHOS-RXN]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_14504]]
| + | |
| − | *** [[Tiso_gene_18206]]
| + | |
| − | *** [[Tiso_gene_974]]
| + | |
| − | *** [[Tiso_gene_14505]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[PGLUCISOM-RXN]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_19480]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[PHOSGLYPHOS-RXN]]
| + | |
| − | ** 6 associated gene(s):
| + | |
| − | *** [[Tiso_gene_3527]]
| + | |
| − | *** [[Tiso_gene_18263]]
| + | |
| − | *** [[Tiso_gene_12104]]
| + | |
| − | *** [[Tiso_gene_3526]]
| + | |
| − | *** [[Tiso_gene_14642]]
| + | |
| − | *** [[Tiso_gene_18264]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[RIB5PISOM-RXN]]
| + | |
| − | ** 1 associated gene(s):
| + | |
| − | *** [[Tiso_gene_18217]]
| + | |
| − | ** 5 reconstruction source(s) associated:
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | * [[RIBULP3EPIM-RXN]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_4754]]
| + | |
| − | *** [[Tiso_gene_19140]]
| + | |
| − | *** [[Tiso_gene_10879]]
| + | |
| − | ** 7 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[orthology-synechocystis]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | * [[TRANSALDOL-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_17601]]
| + | |
| − | *** [[Tiso_gene_1831]]
| + | |
| − | ** 6 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-athaliana]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[orthology-creinhardtii]]
| + | |
| − | == Reaction(s) not found == | + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN] | + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN]
| + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN] | + | |
| − | * [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
| + | |
| | == External links == | | == External links == |
| − | {{#set: taxonomic range=TAX-201174}} | + | {{#set: right end position=11452}} |
| − | {{#set: common name=Bifidobacterium shunt}} | + | {{#set: transcription direction=POSITIVE}} |
| − | {{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}} | + | {{#set: left end position=10343}} |
| − | {{#set: reaction found=11}} | + | {{#set: centisome position=39.59498 }} |
| − | {{#set: total reaction=15}} | + | {{#set: reaction associated=RXN-5061}} |
| − | {{#set: completion rate=73.0}} | + | {{#set: pathway associated=PWY-2201|CODH-PWY}} |
