Difference between revisions of "Tiso gene 1960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** succinyl-_ligase * e...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5973 PWY-5973] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5973 PWY-5973] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
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** succinyl-_ligase
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** cis-vaccenate biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
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* Synonym(s):
 
* Synonym(s):
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** Succinate thiokinase
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** cis vaccenic acid acid biosynthesis
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** succinyl CoA synthesis
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[SUC-COA]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
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* [[2.3.1.179-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 ATP[c] '''+''' 1 succinate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 succinyl-CoA[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
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*** [[Tiso_gene_19302]]
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*** [[Tiso_gene_14485]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_19303]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_15846]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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* [[RXN-9556]]
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** EXPERIMENTAL_ANNOTATION
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_13083]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_9885]]
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** [[pantograph]]-[[synechocystis]]
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** 3 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_11866]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[RXN-9557]]
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***EC-NUMBER
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** 1 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_6884]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-9558]]
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** [[pantograph]]-[[creinhardtii]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_10778]]
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** 1 reconstruction source(s) associated:
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** '''9''' reactions found over '''11''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
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== Reaction(s) not found ==
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9555 RXN-9555]
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''5''' reactions found over '''12''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5973 PWY-5973]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: taxonomic range=TAX-3398}}
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* UNIPROT:
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{{#set: common name=cis-vaccenate biosynthesis}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
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{{#set: common name=cis vaccenic acid acid biosynthesis}}
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** [http://www.uniprot.org/uniprot/P53594 P53594]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/O28733 O28733]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P45101 P45101]
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/P45102 P45102]
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** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
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** [http://www.uniprot.org/uniprot/Q58643 Q58643]
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** [http://www.uniprot.org/uniprot/O26663 O26663]
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** [http://www.uniprot.org/uniprot/P80886 P80886]
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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** [http://www.uniprot.org/uniprot/P80865 P80865]
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** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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** [http://www.uniprot.org/uniprot/O67729 O67729]
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** [http://www.uniprot.org/uniprot/O67546 O67546]
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** [http://www.uniprot.org/uniprot/P53593 P53593]
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** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
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** [http://www.uniprot.org/uniprot/P0A836 P0A836]
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** [http://www.uniprot.org/uniprot/O82662 O82662]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=succinyl-_ligase}}
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{{#set: ec number=EC-6.2.1.5}}
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{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
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{{#set: gene associated=Tiso_gene_15846|Tiso_gene_11866}}
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{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-5690|PWY-6969|PWY-6728|PWY-5538|TCA|PWY66-398|PWY-5537}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:26, 21 March 2018

Pathway PWY-5973

  • taxonomic range:
  • common name:
    • cis-vaccenate biosynthesis
  • Synonym(s):
    • cis vaccenic acid acid biosynthesis

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1960&oldid=34187"