Difference between revisions of "PWY-5079"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
+
** REVERSIBLE
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
 
* common name:
 
* common name:
−
** UMP biosynthesis II
+
** ORF
 +
** transaldolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
−
** uridine-5'-phosphate biosynthesis II
 
−
** de novo biosynthesis of uridine-5'-phosphate II
 
−
** de novo biosynthesis of uridine-5'-monophosphate II
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''6''' reactions in the full pathway
+
* With identifiers:
−
* [[ASPCARBTRANS-RXN]]
+
** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_13527]]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
−
** 7 reconstruction source(s) associated:
+
 
−
*** [[annotation-experimental_annotation]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-esiliculosus]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_17601]]
−
*** [[orthology-athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-synechocystis]]
+
*** Assignment: EC-NUMBER
−
*** [[manual-primary_network]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[orthology-creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[CARBPSYN-RXN]]
+
* Gene: [[Tiso_gene_1831]]
−
** 3 associated gene(s):
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_4976]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_4975]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_4685]]
+
*** Assignment: EC-NUMBER
−
** 4 reconstruction source(s) associated:
+
** Source: [[orthology-athaliana]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** [[manual-primary_network]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-creinhardtii]]
−
*** [[orthology-esiliculosus]]
+
== Pathways  ==
−
* [[DIHYDROOROT-RXN]]
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
** 1 associated gene(s):
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
*** [[Tiso_gene_15379]]
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
−
** 5 reconstruction source(s) associated:
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
*** [[annotation-experimental_annotation]]
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
−
*** [[manual-primary_network]]
+
** '''11''' reactions found over '''15''' reactions in the full pathway
−
*** [[orthology-creinhardtii]]
+
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
−
*** [[orthology-synechocystis]]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
*** [[annotation-in-silico_annotation]]
+
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
−
* [[OROPRIBTRANS-RXN]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** 3 associated gene(s):
+
== Reconstruction information  ==
−
*** [[Tiso_gene_11163]]
+
* Category: [[orthology]]
−
*** [[Tiso_gene_11164]]
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_18647]]
+
*** Tool: [[pantograph]]
−
** 4 reconstruction source(s) associated:
+
** Source: [[orthology-creinhardtii]]
−
*** [[orthology-athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[manual-primary_network]]
+
* Category: [[manual]]
−
* [[OROTPDECARB-RXN]]
+
** Source: [[manual-primary_network]]
−
** 2 associated gene(s):
+
* Category: [[annotation]]
−
*** [[Tiso_gene_20050]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_18647]]
+
*** Tool: [[pathwaytools]]
−
** 5 reconstruction source(s) associated:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[orthology-athaliana]]
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[manual-primary_network]]
+
−
* [[RXN-9929]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_5280]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-synechocystis]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33682}}
+
* RHEA:
−
{{#set: taxonomic range=TAX-4751}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
−
{{#set: taxonomic range=TAX-2}}
+
* LIGAND-RXN:
−
{{#set: common name=UMP biosynthesis II}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
−
{{#set: common name=uridine-5'-phosphate biosynthesis II|de novo biosynthesis of uridine-5'-phosphate II|de novo biosynthesis of uridine-5'-monophosphate II}}
+
* UNIPROT:
−
{{#set: reaction found=6}}
+
** [http://www.uniprot.org/uniprot/P17441 P17441]
−
{{#set: total reaction=6}}
+
** [http://www.uniprot.org/uniprot/P17440 P17440]
−
{{#set: completion rate=100.0}}
+
** [http://www.uniprot.org/uniprot/P37837 P37837]
 +
** [http://www.uniprot.org/uniprot/P45055 P45055]
 +
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
 +
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
 +
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
 +
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
 +
** [http://www.uniprot.org/uniprot/P34214 P34214]
 +
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
 +
** [http://www.uniprot.org/uniprot/P15019 P15019]
 +
** [http://www.uniprot.org/uniprot/P53228 P53228]
 +
** [http://www.uniprot.org/uniprot/P51778 P51778]
 +
** [http://www.uniprot.org/uniprot/P72797 P72797]
 +
** [http://www.uniprot.org/uniprot/O04894 O04894]
 +
** [http://www.uniprot.org/uniprot/P78865 P78865]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=transaldolase}}
 +
{{#set: ec number=EC-2.2.1.2}}
 +
{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
 +
{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:28, 21 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glyceraldehyde 3-phosphate[c] + 1 D-sedoheptulose 7-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5079&oldid=34387"