Difference between revisions of "PWY-5079"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
−
** UMP biosynthesis II
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** ORF
 +
** transaldolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
−
** uridine-5'-phosphate biosynthesis II
 
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** de novo biosynthesis of uridine-5'-phosphate II
 
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** de novo biosynthesis of uridine-5'-monophosphate II
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[ASPCARBTRANS-RXN]]
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** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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** 1 associated gene(s):
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* With common name(s):
−
*** [[Tiso_gene_13527]]
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** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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** 7 reconstruction source(s) associated:
+
 
−
*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_17601]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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* [[CARBPSYN-RXN]]
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* Gene: [[Tiso_gene_1831]]
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** 3 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_4976]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_4975]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_4685]]
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*** Assignment: EC-NUMBER
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** 4 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[manual-primary_network]]
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[DIHYDROOROT-RXN]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** 1 associated gene(s):
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[Tiso_gene_15379]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** 5 reconstruction source(s) associated:
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** '''11''' reactions found over '''12''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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*** [[manual-primary_network]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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*** [[orthology-synechocystis]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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* [[OROPRIBTRANS-RXN]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_11163]]
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* Category: [[orthology]]
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*** [[Tiso_gene_11164]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_18647]]
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*** Tool: [[pantograph]]
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** 4 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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*** [[manual-primary_network]]
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* Category: [[manual]]
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* [[OROTPDECARB-RXN]]
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** Source: [[manual-primary_network]]
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** 2 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_20050]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18647]]
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*** Tool: [[pathwaytools]]
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** 5 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RXN-9929]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5280]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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−
== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33682}}
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=UMP biosynthesis II}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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{{#set: common name=uridine-5'-phosphate biosynthesis II|de novo biosynthesis of uridine-5'-phosphate II|de novo biosynthesis of uridine-5'-monophosphate II}}
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* UNIPROT:
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=transaldolase}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
 +
{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:28, 21 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glyceraldehyde 3-phosphate[c] + 1 D-sedoheptulose 7-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5079&oldid=34387"