Difference between revisions of "PWY-7746"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-O-ACETTRAN-RXN SERINE-O-ACETTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ser...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** polyketide_synthase |
− | + | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/2.3.1. | + | ** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86] |
+ | ** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85] | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59] | ||
* Synonym(s): | * Synonym(s): | ||
+ | ** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase | ||
+ | ** β-hydroxyacyl-ACP dehydrase | ||
+ | ** HDDase | ||
+ | ** β-hydroxyacyl-acyl carrier protein dehydratase | ||
+ | ** FabA | ||
+ | ** β-hydroxydecanoyl thiol ester dehydrase | ||
+ | ** β-hydroxydecanoate dehydrase | ||
+ | ** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Trans-D2-decenoyl-ACPs]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dec-2-enoyl-[acp][c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_10876]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | * | + | * Gene: [[Tiso_gene_136]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** | + | *** Assignment: EC-NUMBER |
− | * | + | * Gene: [[Tiso_gene_500]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | + | *** Assignment: EC-NUMBER | |
− | + | * Gene: [[Tiso_gene_13394]] | |
− | ***EC-NUMBER | + | ** Source: [[annotation-in-silico_annotation]] |
− | * | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | * Gene: [[Tiso_gene_135]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | * | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | * Gene: [[Tiso_gene_6884]] |
− | + | ** Source: [[annotation-experimental_annotation]] | |
− | + | *** Assignment: AUTOMATED-NAME-MATCH | |
− | ***EC-NUMBER | + | |
− | * | + | |
− | ** [[ | + | |
− | ** | + | |
− | * | + | |
− | + | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[ | + | * [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862] |
− | ** ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
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* Category: [[manual]] | * Category: [[manual]] | ||
** Source: [[manual-primary_network]] | ** Source: [[manual-primary_network]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
** Source: [[annotation-in-silico_annotation]] | ** Source: [[annotation-in-silico_annotation]] | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
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{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=polyketide_synthase}} |
− | {{#set: | + | {{#set: ec number=EC-2.3.1.86}} |
− | {{#set: ec number=EC-2.3.1. | + | {{#set: ec number=EC-2.3.1.85}} |
− | {{#set: gene associated= | + | {{#set: ec number=EC-4.2.1.59}} |
− | {{#set: in pathway= | + | {{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxyacyl-ACP dehydrase|HDDase|β-hydroxyacyl-acyl carrier protein dehydratase|FabA|β-hydroxydecanoyl thiol ester dehydrase|β-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}} |
− | {{#set: reconstruction category= | + | {{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884}} |
− | {{#set: reconstruction source= | + | {{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=manual|annotation}} |
+ | {{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools}} |
Revision as of 15:30, 21 March 2018
Contents
Reaction RXN-9655
- direction:
- LEFT-TO-RIGHT
- common name:
- polyketide_synthase
- ec number:
- Synonym(s):
- (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
- β-hydroxyacyl-ACP dehydrase
- HDDase
- β-hydroxyacyl-acyl carrier protein dehydratase
- FabA
- β-hydroxydecanoyl thiol ester dehydrase
- β-hydroxydecanoate dehydrase
- D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
Reaction Formula
- With identifiers:
- 1 Beta-hydroxydecanoyl-ACPs[c] => 1 WATER[c] + 1 Trans-D2-decenoyl-ACPs[c]
- With common name(s):
- 1 a (3R)-3-hydroxydecanoyl-[acp][c] => 1 H2O[c] + 1 a (2E)-dec-2-enoyl-[acp][c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_10876
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_136
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_500
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_13394
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_135
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6884
- Source: annotation-experimental_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-experimental_annotation
Pathways
- PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
- 31 reactions found over 31 reactions in the full pathway
- PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
- 31 reactions found over 31 reactions in the full pathway
- PWY0-862, (5Z)-dodec-5-enoate biosynthesis: PWY0-862
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links
- "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" cannot be used as a page name in this wiki.
- "D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase" cannot be used as a page name in this wiki.