Difference between revisions of "DERMATAN-L-IDURONATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13037 RXN-13037] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl:GcvH transferase *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13037 RXN-13037] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** octanoyl:GcvH transferase
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** fatty acid β-oxidation II (peroxisome)
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** lipoate-protein_ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.181 EC-2.3.1.181]
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* Synonym(s):
 
* Synonym(s):
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** fatty acid β-oxidation II (plants)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[Gcv-H]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Octanoylated-Gcv-H]][c] '''+''' 1 [[PROTON]][c]
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* [[ACYLCOASYN-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''+''' 1 an octanoyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_7855]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_9394]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_10876]]
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* [[Tiso_gene_4493]]
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*** [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13394]]
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***EC-NUMBER
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*** [[Tiso_gene_500]]
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* [[Tiso_gene_4494]]
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*** [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_135]]
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***EC-NUMBER
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** 3 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987]
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*** [[annotation-experimental_annotation]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-7382]], lipoate biosynthesis and incorporation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7382 PWY-7382]
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* [[ENOYL-COA-HYDRAT-RXN]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_14262]]
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* Category: [[annotation]]
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*** [[Tiso_gene_16145]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6885]]
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*** Tool: [[pathwaytools]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[KETOACYLCOATHIOL-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_10116]]
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*** [[Tiso_gene_17451]]
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*** [[Tiso_gene_3856]]
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*** [[Tiso_gene_3855]]
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*** [[Tiso_gene_15327]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[OHACYL-COA-DEHYDROG-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_18838]]
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*** [[Tiso_gene_18839]]
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*** [[Tiso_gene_14262]]
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*** [[Tiso_gene_14026]]
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*** [[Tiso_gene_14027]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11026]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18566]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* METACYC:
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{{#set: common name=octanoyl:GcvH transferase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=PWY-5136 PWY-5136]
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{{#set: common name=lipoate-protein_ligase}}
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* ARACYC:
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{{#set: ec number=EC-2.3.1.181}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5136 PWY-5136]
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{{#set: gene associated=Tiso_gene_4493|Tiso_gene_4494}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=PWY-6987|PWY-7382}}
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{{#set: common name=fatty acid β-oxidation II (peroxisome)}}
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{{#set: reconstruction category=annotation}}
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{{#set: common name=fatty acid β-oxidation II (plants)}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reaction found=5}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=5}}
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{{#set: completion rate=100.0}}

Revision as of 15:30, 21 March 2018

Pathway PWY-5136

  • taxonomic range:
  • common name:
    • fatty acid β-oxidation II (peroxisome)
  • Synonym(s):
    • fatty acid β-oxidation II (plants)

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




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