Difference between revisions of "Tiso gene 16954"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13617 RXN-13617] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13617 RXN-13617] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.2.21-RXN 3.1.2.21-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** thiolase
 
−
** acetyl-_c-acetyltransferase
 
−
** 3-ketoacyl-_thiolase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/3.1.2.21 EC-3.1.2.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD0-2123]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-196]][c] '''+''' 1 [[ACETYL-COA]][c]
+
** 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[DODECANOATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-oxodecanoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 octanoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
+
** 1 a dodecanoyl-[acp][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 laurate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_15327]]
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_3855]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_17451]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_10116]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_16181]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
* [[Tiso_gene_3856]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
** Source: [[orthology-creinhardtii]]
+
**** Comment: [[added for gapfilling]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31089 31089]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03778 R03778]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04014 R04014]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thiolase}}
+
{{#set: ec number=EC-3.1.2.21}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: in pathway=PWY-5971|PWY-5994}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: ec number=EC-2.3.1.16}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: gene associated=Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_10116|Tiso_gene_16181|Tiso_gene_3856}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: in pathway=PWY-7094}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:32, 21 March 2018

Reaction 3.1.2.21-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a dodecanoyl-[acp][c] + 1 H2O[c] => 1 H+[c] + 1 a holo-[acyl-carrier protein][c] + 1 laurate[c]

Genes associated with this reaction

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links




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