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− | [[Category:Reaction]] | + | [[Category:Metabolite]] |
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Single-Stranded-DNAs Single-Stranded-DNAs] == |
− | * direction: | + | * common name: |
− | ** REVERSIBLE | + | ** a single stranded DNA |
− | * ec number:
| + | |
− | ** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
| + | |
| * Synonym(s): | | * Synonym(s): |
| + | ** an ssDNA |
| | | |
− | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
− | * With identifiers:
| + | == Reaction(s) known to produce the compound == |
− | ** 1 [[L-ORNITHINE]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c]
| + | * [[RXN0-4261]] |
− | * With common name(s):
| + | == Reaction(s) of unknown directionality == |
− | ** 1 L-ornithine[c] '''+''' 1 carbamoyl phosphate[c] '''<=>''' 1 phosphate[c] '''+''' 1 L-citrulline[c] '''+''' 1 H+[c]
| + | * [[RXN0-5021]] |
− | | + | |
− | == Genes associated with this reaction == | + | |
− | Genes have been associated with this reaction based on different elements listed below.
| + | |
− | * [[Tiso_gene_18444]]
| + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[athaliana]]
| + | |
− | ** [[pantograph]]-[[synechocystis]]
| + | |
− | ** [[pantograph]]-[[esiliculosus]]
| + | |
− | ** [[pantograph]]-[[creinhardtii]]
| + | |
− | ** [[pantograph]]-[[creinhardtii]]
| + | |
− | ** [[pantograph]]-[[creinhardtii]]
| + | |
− | == Pathways == | + | |
− | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
| + | |
− | ** '''5''' reactions found over '''6''' reactions in the full pathway
| + | |
− | * [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
| + | |
− | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
− | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY] | + | |
− | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
− | * [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
| + | |
− | ** '''4''' reactions found over '''6''' reactions in the full pathway
| + | |
− | * [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
| + | |
− | ** '''7''' reactions found over '''9''' reactions in the full pathway
| + | |
− | * [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
| + | |
− | ** '''2''' reactions found over '''2''' reactions in the full pathway
| + | |
− | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY] | + | |
− | ** '''8''' reactions found over '''8''' reactions in the full pathway
| + | |
− | == Reconstruction information ==
| + | |
− | * Category: [[orthology]]
| + | |
− | ** Source: [[orthology-athaliana]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | ** Source: [[orthology-creinhardtii]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | ** Source: [[orthology-synechocystis]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | ** Source: [[orthology-esiliculosus]]
| + | |
− | *** Tool: [[pantograph]]
| + | |
− | * Category: [[manual]]
| + | |
− | ** Source: [[manual-primary_network]]
| + | |
− | * Category: [[annotation]]
| + | |
− | ** Source: [[annotation-in-silico_annotation]]
| + | |
− | *** Tool: [[pathwaytools]]
| + | |
− | ** Source: [[annotation-experimental_annotation]]
| + | |
− | *** Tool: [[pathwaytools]]
| + | |
| == External links == | | == External links == |
− | * RHEA:
| + | {{#set: common name=a single stranded DNA}} |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
| + | {{#set: common name=an ssDNA}} |
− | * LIGAND-RXN:
| + | {{#set: produced by=RXN0-4261}} |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
| + | {{#set: reversible reaction associated=RXN0-5021}} |
− | * UNIPROT:
| + | |
− | ** [http://www.uniprot.org/uniprot/Q58291 Q58291]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
| + | |
− | ** [http://www.uniprot.org/uniprot/P11727 P11727]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
| + | |
− | ** [http://www.uniprot.org/uniprot/P44770 P44770]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
| + | |
− | ** [http://www.uniprot.org/uniprot/P11066 P11066]
| + | |
− | ** [http://www.uniprot.org/uniprot/P11803 P11803]
| + | |
− | ** [http://www.uniprot.org/uniprot/P18186 P18186]
| + | |
− | ** [http://www.uniprot.org/uniprot/P05150 P05150]
| + | |
− | ** [http://www.uniprot.org/uniprot/P14995 P14995]
| + | |
− | ** [http://www.uniprot.org/uniprot/P06960 P06960]
| + | |
− | ** [http://www.uniprot.org/uniprot/P04391 P04391]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00480 P00480]
| + | |
− | ** [http://www.uniprot.org/uniprot/P11725 P11725]
| + | |
− | ** [http://www.uniprot.org/uniprot/P21302 P21302]
| + | |
− | ** [http://www.uniprot.org/uniprot/P11724 P11724]
| + | |
− | ** [http://www.uniprot.org/uniprot/P08308 P08308]
| + | |
− | ** [http://www.uniprot.org/uniprot/P68747 P68747]
| + | |
− | ** [http://www.uniprot.org/uniprot/P00481 P00481]
| + | |
− | ** [http://www.uniprot.org/uniprot/P31317 P31317]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01322 Q01322]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01323 Q01323]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01324 Q01324]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01326 Q01326]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01325 Q01325]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q01327 Q01327]
| + | |
− | ** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q02047 Q02047]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q48296 Q48296]
| + | |
− | ** [http://www.uniprot.org/uniprot/P75473 P75473]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q49080 Q49080]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q43814 Q43814]
| + | |
− | ** [http://www.uniprot.org/uniprot/O53089 O53089]
| + | |
− | ** [http://www.uniprot.org/uniprot/O50039 O50039]
| + | |
− | {{#set: direction=REVERSIBLE}} | + | |
− | {{#set: ec number=EC-2.1.3.3}} | + | |
− | {{#set: gene associated=Tiso_gene_18444}} | + | |
− | {{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
| + | |
− | {{#set: reconstruction category=orthology|manual|annotation}} | + | |
− | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
| + | |
− | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |