Difference between revisions of "Tiso gene 4418"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ANTHRANSYN-RXN ANTHRANSYN-RXN] == * direction: ** REVERSIBLE * common name: ** anthranilate_synthas...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CMP-KDO CMP-KDO] == * smiles: ** C(O)C(O)[CH]3(OC(OP(OCC2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))([O...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ANTHRANSYN-RXN ANTHRANSYN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CMP-KDO CMP-KDO] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(O)C(O)[CH]3(OC(OP(OCC2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))([O-])=O)(C([O-])=O)CC(C3O)O)
 
* common name:
 
* common name:
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** anthranilate_synthase
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** CMP-3-deoxy-β-D-manno-octulosonate
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/4.1.3.27 EC-4.1.3.27]
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** InChIKey=YWWJKULNWGRYAS-XKKDATLGSA-L
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* molecular weight:
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** 541.361   
 
* Synonym(s):
 
* Synonym(s):
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** CMP-2-dehydro-3-deoxy-D-octonate
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** CMP-Kdo
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** CMP-β-Kdo
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** CMP-ketodeoxyoctonate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[KDOTRANS-RXN]]
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** 1 [[CHORISMATE]][c] '''+''' 1 [[GLN]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ANTHRANILATE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PYRUVATE]][c]
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* [[KDOTRANS2-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 chorismate[c] '''+''' 1 L-glutamine[c] '''<=>''' 1 H+[c] '''+''' 1 anthranilate[c] '''+''' 1 L-glutamate[c] '''+''' 1 pyruvate[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_11176]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5958]], acridone alkaloid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5958 PWY-5958]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6661]], 4-hydroxy-2(1H)-quinolone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6661 PWY-6661]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6660]], 2-heptyl-3-hydroxy-4(1H)-quinolone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6660 PWY-6660]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21732 21732]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=91825729 91825729]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R00986 R00986]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=85987 85987]
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* UNIPROT:
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* BIGG : ckdo
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** [http://www.uniprot.org/uniprot/P00897 P00897]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P15395 P15395]
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** [http://www.genome.jp/dbget-bin/www_bget?C04121 C04121]
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** [http://www.uniprot.org/uniprot/P21690 P21690]
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{{#set: smiles=C(O)C(O)[CH]3(OC(OP(OCC2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))([O-])=O)(C([O-])=O)CC(C3O)O)}}
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** [http://www.uniprot.org/uniprot/P33975 P33975]
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{{#set: common name=CMP-3-deoxy-&beta;-D-manno-octulosonate}}
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** [http://www.uniprot.org/uniprot/Q9PIF4 Q9PIF4]
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{{#set: inchi key=InChIKey=YWWJKULNWGRYAS-XKKDATLGSA-L}}
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** [http://www.uniprot.org/uniprot/P06557 P06557]
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{{#set: molecular weight=541.361    }}
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** [http://www.uniprot.org/uniprot/P20463 P20463]
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{{#set: common name=CMP-2-dehydro-3-deoxy-D-octonate|CMP-Kdo|CMP-&beta;-Kdo|CMP-ketodeoxyoctonate}}
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** [http://www.uniprot.org/uniprot/P09786 P09786]
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{{#set: consumed by=KDOTRANS-RXN|KDOTRANS2-RXN}}
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** [http://www.uniprot.org/uniprot/Q06129 Q06129]
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** [http://www.uniprot.org/uniprot/P33974 P33974]
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** [http://www.uniprot.org/uniprot/Q9R5Z6 Q9R5Z6]
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** [http://www.uniprot.org/uniprot/Q58475 Q58475]
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** [http://www.uniprot.org/uniprot/P20441 P20441]
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** [http://www.uniprot.org/uniprot/P43761 P43761]
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** [http://www.uniprot.org/uniprot/Q57686 Q57686]
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** [http://www.uniprot.org/uniprot/Q08654 Q08654]
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** [http://www.uniprot.org/uniprot/Q8X3T2 Q8X3T2]
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** [http://www.uniprot.org/uniprot/P20580 P20580]
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** [http://www.uniprot.org/uniprot/Q08653 Q08653]
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** [http://www.uniprot.org/uniprot/Q8X3T1 Q8X3T1]
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** [http://www.uniprot.org/uniprot/P20579 P20579]
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** [http://www.uniprot.org/uniprot/P09785 P09785]
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** [http://www.uniprot.org/uniprot/Q9JUS0 Q9JUS0]
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** [http://www.uniprot.org/uniprot/Q02001 Q02001]
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** [http://www.uniprot.org/uniprot/Q57690 Q57690]
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** [http://www.uniprot.org/uniprot/Q9XAZ0 Q9XAZ0]
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** [http://www.uniprot.org/uniprot/Q9PIF5 Q9PIF5]
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** [http://www.uniprot.org/uniprot/P42387 P42387]
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** [http://www.uniprot.org/uniprot/P42388 P42388]
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** [http://www.uniprot.org/uniprot/Q06128 Q06128]
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** [http://www.uniprot.org/uniprot/P18267 P18267]
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** [http://www.uniprot.org/uniprot/P32068 P32068]
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** [http://www.uniprot.org/uniprot/Q42565 Q42565]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P14953 P14953]
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** [http://www.uniprot.org/uniprot/P03963 P03963]
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** [http://www.uniprot.org/uniprot/P00899 P00899]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00896 P00896]
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** [http://www.uniprot.org/uniprot/P00898 P00898]
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** [http://www.uniprot.org/uniprot/P00906 P00906]
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** [http://www.uniprot.org/uniprot/P00905 P00905]
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** [http://www.uniprot.org/uniprot/P00895 P00895]
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** [http://www.uniprot.org/uniprot/P00904 P00904]
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** [http://www.uniprot.org/uniprot/P00902 P00902]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P00901 P00901]
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** [http://www.uniprot.org/uniprot/P00900 P00900]
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** [http://www.uniprot.org/uniprot/P14952 P14952]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P23315 P23315]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P30526 P30526]
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** [http://www.uniprot.org/uniprot/P32069 P32069]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q02003 Q02003]
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** [http://www.uniprot.org/uniprot/P51362 P51362]
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** [http://www.uniprot.org/uniprot/Q55144 Q55144]
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** [http://www.uniprot.org/uniprot/P20170 P20170]
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** [http://www.uniprot.org/uniprot/P74130 P74130]
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** [http://www.uniprot.org/uniprot/O81533 O81533]
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** [http://www.uniprot.org/uniprot/Q08073 Q08073]
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** [http://www.uniprot.org/uniprot/P48261 P48261]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9S593 Q9S593]
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** [http://www.uniprot.org/uniprot/Q9X7C5 Q9X7C5]
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** [http://www.uniprot.org/uniprot/Q9RQG2 Q9RQG2]
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** [http://www.uniprot.org/uniprot/Q9ZFA9 Q9ZFA9]
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** [http://www.uniprot.org/uniprot/Q41156 Q41156]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=anthranilate_synthase}}
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{{#set: ec number=EC-4.1.3.27}}
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{{#set: gene associated=Tiso_gene_11176}}
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{{#set: in pathway=TRPSYN-PWY|PWY-5958|PWY-6661|PWY-6660}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:33, 21 March 2018

Metabolite CMP-KDO

  • smiles:
    • C(O)C(O)[CH]3(OC(OP(OCC2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))([O-])=O)(C([O-])=O)CC(C3O)O)
  • common name:
    • CMP-3-deoxy-β-D-manno-octulosonate
  • inchi key:
    • InChIKey=YWWJKULNWGRYAS-XKKDATLGSA-L
  • molecular weight:
    • 541.361
  • Synonym(s):
    • CMP-2-dehydro-3-deoxy-D-octonate
    • CMP-Kdo
    • CMP-β-Kdo
    • CMP-ketodeoxyoctonate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(O)C(O)[CH]3(OC(OP(OCC2(C(C(C(N1(C(N=C(C=C1)N)=O))O2)O)O))([O-])=O)(C([O-])=O)CC(C3O)O)" cannot be used as a page name in this wiki.



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