Difference between revisions of "Tiso gene 17192"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4209 RXN-4209] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Gene == Gene Tiso_gene_6563 == * right end position: ** 3640 * transcription direction: ** POSITIVE * left end position: ** 2548 * centisome position: ** 21.14347...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4209 RXN-4209] ==
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== Gene Tiso_gene_6563 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3640
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.14.19.20 EC-1.14.19.20]
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** POSITIVE
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* left end position:
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** 2548
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* centisome position:
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** 21.143475   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.31-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[CPD-4125]][c] '''=>''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 1 [[CPD-4126]][c] '''+''' 2 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 oxygen[c] '''+''' 2 H+[c] '''+''' 2 a ferrocytochrome b5[c] '''+''' 1 avenasterol[c] '''=>''' 2 a ferricytochrome b5[c] '''+''' 1 5-dehydroavenasterol[c] '''+''' 2 H2O[c]
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* Reaction: [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ALCOHOL-DEHYDROG-RXN]]
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* [[Tiso_gene_5446]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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== Pathways ==
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* Reaction: [[ALLYSINE-DEHYDROG-RXN]]
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* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
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** Source: [[annotation-in-silico_annotation]]
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** '''10''' reactions found over '''36''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[L-IDITOL-2-DEHYDROGENASE-RXN]]
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* Category: [[orthology]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
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*** Tool: [[pantograph]]
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* Reaction: [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10781]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10915]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12448]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12560]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-13198]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-13279]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5424]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5901]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7644]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7657]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7693]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7694]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7700]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7706]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8162]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN3O-4113]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN66-478]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY66-21]]
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* [[PWY-6587]]
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* [[PWY-7111]]
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* [[FERMENTATION-PWY]]
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* [[PWY-5676]]
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* [[PWY-5082]]
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* [[PWY-7118]]
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* [[PWY-7013]]
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* [[PWY-3162]]
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* [[PWY-5751]]
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* [[PWY-6342]]
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* [[PWY1-3]]
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* [[PWY-5283]]
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* [[P161-PWY]]
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* [[ETOH-ACETYLCOA-ANA-PWY]]
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* [[PWY-6871]]
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* [[PWY-7396]]
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* [[PWY-5057]]
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* [[PWY-5741]]
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* [[PWY-5076]]
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* [[PWY-6333]]
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* [[PWY-5486]]
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* [[PWY-5079]]
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* [[PWY-5078]]
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* [[PWY-6313]]
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* [[PWY66-425]]
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* [[PWY-5480]]
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* [[PWY-5298]]
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* [[PWY3O-4108]]
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* [[PWY-7216]]
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* [[PWY-6802]]
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* [[LYSINE-DEG1-PWY]]
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* [[P122-PWY]]
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* [[PWY66-389]]
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* [[PWY4LZ-257]]
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* [[PWY-4101]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3640}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07486 R07486]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=2548}}
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{{#set: ec number=EC-1.14.19.20}}
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{{#set: centisome position=21.143475    }}
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{{#set: gene associated=Tiso_gene_5446}}
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{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN-8162|RXN3O-4113|RXN66-478}}
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{{#set: in pathway=PWY-2541}}
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{{#set: pathway associated=PWY66-21|PWY-6587|PWY-7111|FERMENTATION-PWY|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|PWY-5283|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY-5298|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:34, 21 March 2018

Gene Tiso_gene_6563

  • right end position:
    • 3640
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2548
  • centisome position:
    • 21.143475
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17192&oldid=34879"