Difference between revisions of "RXN-17678"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PMPOXI-RXN PMPOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxamine_5_-phosphate...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4171 RXNQT-4171] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-isopropylmalate dehydro...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PMPOXI-RXN PMPOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNQT-4171 RXNQT-4171] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pyridoxamine_5_-phosphate_oxidase-related_fmn-binding
+
** 3-isopropylmalate dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.3.5 EC-1.4.3.5]
+
** [http://enzyme.expasy.org/EC/1.1.1.85 EC-1.1.1.85]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[CPDQT-38]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPDQT-29]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 oxygen[c] '''+''' 1 pyridoxamine 5'-phosphate[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 pyridoxal 5'-phosphate[c] '''+''' 1 ammonium[c]
+
** 1 3-(5'-methylthio)pentylmalate[c] '''+''' 1 NAD+[c] '''=>''' 1 8-(methylthio)-2-oxooctanoate[c] '''+''' 1 CO2[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1471]]
+
* Gene: [[Tiso_gene_2920]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15817 15817]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00277 R00277]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08636 R08636]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P0AFI7 P0AFI7]
+
−
** [http://www.uniprot.org/uniprot/Q9JTZ1 Q9JTZ1]
+
−
** [http://www.uniprot.org/uniprot/P44909 P44909]
+
−
** [http://www.uniprot.org/uniprot/P38075 P38075]
+
−
** [http://www.uniprot.org/uniprot/P74211 P74211]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=pyridoxamine_5_-phosphate_oxidase-related_fmn-binding}}
+
{{#set: common name=3-isopropylmalate dehydrogenase}}
−
{{#set: ec number=EC-1.4.3.5}}
+
{{#set: ec number=EC-1.1.1.85}}
−
{{#set: gene associated=Tiso_gene_1471}}
+
{{#set: gene associated=Tiso_gene_2920}}
−
{{#set: in pathway=PWY-7204|PLPSAL-PWY}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:34, 21 March 2018

Reaction RXNQT-4171

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-isopropylmalate dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-(5'-methylthio)pentylmalate[c] + 1 NAD+[c] => 1 8-(methylthio)-2-oxooctanoate[c] + 1 CO2[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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