Difference between revisions of "SINAPOYL-COA"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_1810 == * Synonym(s): == Reactions associated == * 2.7.10.1-RXN ** in-silico_annotation ***ec-number * 2.7.12.1-RXN ** in-silico_a...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** pyruvate_kinase * ec n...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == |
+ | * direction: | ||
+ | ** REVERSIBLE | ||
+ | * common name: | ||
+ | ** pyruvate_kinase | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40] | ||
* Synonym(s): | * Synonym(s): | ||
− | == | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | ** in- | + | ** 1 [[PYRUVATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] |
− | *** | + | * With common name(s): |
− | * [[ | + | ** 1 pyruvate[c] '''+''' 1 ATP[c] '''<=>''' 1 phosphoenolpyruvate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] |
− | ** in- | + | |
− | *** | + | == Genes associated with this reaction == |
− | * [[ | + | Genes have been associated with this reaction based on different elements listed below. |
− | ** in- | + | * Gene: [[Tiso_gene_18206]] |
− | *** | + | ** Source: [[annotation-experimental_annotation]] |
− | == | + | *** Assignment: EC-NUMBER |
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | * Gene: [[Tiso_gene_14504]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_974]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | * Gene: [[Tiso_gene_14505]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | == Pathways == | ||
+ | * [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS] | ||
+ | ** '''12''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901] | ||
+ | ** '''8''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] | ||
+ | ** '''11''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886] | ||
+ | ** '''8''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''9''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] | ||
+ | ** '''7''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] | ||
+ | ** '''8''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] | ||
+ | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] | ||
+ | ** '''11''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-creinhardtii]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M034 Q7M034] | ||
+ | ** [http://www.uniprot.org/uniprot/P11979 P11979] | ||
+ | ** [http://www.uniprot.org/uniprot/P11980 P11980] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07637 Q07637] | ||
+ | ** [http://www.uniprot.org/uniprot/P34038 P34038] | ||
+ | ** [http://www.uniprot.org/uniprot/P43924 P43924] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57572 Q57572] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AD61 P0AD61] | ||
+ | ** [http://www.uniprot.org/uniprot/P19680 P19680] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0] | ||
+ | ** [http://www.uniprot.org/uniprot/P80885 P80885] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8] | ||
+ | ** [http://www.uniprot.org/uniprot/P47458 P47458] | ||
+ | ** [http://www.uniprot.org/uniprot/Q46078 Q46078] | ||
+ | ** [http://www.uniprot.org/uniprot/P30614 P30614] | ||
+ | ** [http://www.uniprot.org/uniprot/P22200 P22200] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27788 Q27788] | ||
+ | ** [http://www.uniprot.org/uniprot/P51182 P51182] | ||
+ | ** [http://www.uniprot.org/uniprot/P51181 P51181] | ||
+ | ** [http://www.uniprot.org/uniprot/P31865 P31865] | ||
+ | ** [http://www.uniprot.org/uniprot/P00549 P00549] | ||
+ | ** [http://www.uniprot.org/uniprot/P00548 P00548] | ||
+ | ** [http://www.uniprot.org/uniprot/P30613 P30613] | ||
+ | ** [http://www.uniprot.org/uniprot/O75758 O75758] | ||
+ | ** [http://www.uniprot.org/uniprot/P12928 P12928] | ||
+ | ** [http://www.uniprot.org/uniprot/O30853 O30853] | ||
+ | ** [http://www.uniprot.org/uniprot/P30615 P30615] | ||
+ | ** [http://www.uniprot.org/uniprot/P30616 P30616] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02499 Q02499] | ||
+ | ** [http://www.uniprot.org/uniprot/P22360 P22360] | ||
+ | ** [http://www.uniprot.org/uniprot/P21599 P21599] | ||
+ | ** [http://www.uniprot.org/uniprot/P14618 P14618] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42954 Q42954] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40545 Q40545] | ||
+ | ** [http://www.uniprot.org/uniprot/P52480 P52480] | ||
+ | ** [http://www.uniprot.org/uniprot/P52489 P52489] | ||
+ | ** [http://www.uniprot.org/uniprot/P78031 P78031] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55863 Q55863] | ||
+ | ** [http://www.uniprot.org/uniprot/P73534 P73534] | ||
+ | ** [http://www.uniprot.org/uniprot/O65595 O65595] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42806 Q42806] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43117 Q43117] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10208 Q10208] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=pyruvate_kinase}} | ||
+ | {{#set: ec number=EC-2.7.1.40}} | ||
+ | {{#set: gene associated=Tiso_gene_18206|Tiso_gene_14504|Tiso_gene_974|Tiso_gene_14505}} | ||
+ | {{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|P124-PWY|NPGLUCAT-PWY|PWY-7383|PWY-6886|PWY-5723|FERMENTATION-PWY|PWY-7218|PWY-6142|P122-PWY|PWY-5484|PWY-7003}} | ||
+ | {{#set: reconstruction category=orthology|manual|annotation}} | ||
+ | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 15:35, 21 March 2018
Contents
Reaction PEPDEPHOS-RXN
- direction:
- REVERSIBLE
- common name:
- pyruvate_kinase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 PYRUVATE[c] + 1 ATP[c] <=> 1 PHOSPHO-ENOL-PYRUVATE[c] + 1 ADP[c] + 1 PROTON[c]
- With common name(s):
- 1 pyruvate[c] + 1 ATP[c] <=> 1 phosphoenolpyruvate[c] + 1 ADP[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_18206
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-experimental_annotation
- Gene: Tiso_gene_14504
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_974
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-athaliana
- Source: orthology-athaliana
- Source: orthology-synechocystis
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_14505
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-1042, glycolysis IV (plant cytosol): PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- P341-PWY, glycolysis V (Pyrococcus): P341-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
- 5 reactions found over 9 reactions in the full pathway
- GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
- 12 reactions found over 12 reactions in the full pathway
- PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
- 8 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
- 10 reactions found over 10 reactions in the full pathway
- P124-PWY, Bifidobacterium shunt: P124-PWY
- 11 reactions found over 15 reactions in the full pathway
- NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
- 5 reactions found over 7 reactions in the full pathway
- PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
- 8 reactions found over 11 reactions in the full pathway
- PWY-5723, Rubisco shunt: PWY-5723
- 10 reactions found over 10 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 9 reactions found over 16 reactions in the full pathway
- PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
- 7 reactions found over 10 reactions in the full pathway
- PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
- 8 reactions found over 14 reactions in the full pathway
- P122-PWY, heterolactic fermentation: P122-PWY
- 14 reactions found over 18 reactions in the full pathway
- PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
- 11 reactions found over 11 reactions in the full pathway
- PWY-7003, glycerol degradation to butanol: PWY-7003
- 8 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- Q7M034
- P11979
- P11980
- Q07637
- P34038
- P43924
- Q57572
- P0AD61
- P19680
- Q9PIB0
- P80885
- Q9UYU6
- Q9JWX8
- P47458
- Q46078
- P30614
- P22200
- Q27788
- P51182
- P51181
- P31865
- P00549
- P00548
- P30613
- O75758
- P12928
- O30853
- P30615
- P30616
- Q02499
- P22360
- P21599
- P14618
- Q42954
- Q40545
- P52480
- P52489
- P78031
- Q55863
- P73534
- O65595
- Q42806
- Q43117
- Q10208